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Introduction to Molecular Modelling 2

NH3 Molecule

Summary Information of NH3

Molecule = NH3

Calculation Method = RB3LYP

Basis Set = 6-31G(d,p)

Final Energy = -56.55776873 a.u.

RMS gradient = 0.00000485 a.u.

Point Group = C3V

Optimised N-H Bond Distance = 1.01798 Angstrom

Optimised H-N-H Bond Angle = 105.741 Degrees


Item               Value     Threshold  Converged?

 Maximum Force            0.000004     0.000450     YES

 RMS     Force            0.000004     0.000300     YES

 Maximum Displacement     0.000072     0.001800     YES

 RMS     Displacement     0.000035     0.001200     YES

Image of NH3

NH3 Molecule

File:KSHAH NH3 OPTF POP.LOG

Vibrational Modes and Charges Information

From the 3N-6 rule, 6 modes are expected.

Modes 1,2 and 5,6 are degenerate.

Modes 1 and 2 are bending vibrations where as modes 3,4,5 and 6 are stretch vibrations.

Mode 4 is highly symmetric.

Mode 1 is known as the umbrella mode.

4 bands would be seen in an experimental spectrum of gaseous ammonia due to 4 distinct infrared values given.

The charge on the N-atom is -1.125 and the charge on the H-atom is +0.375. The expected charge on the N would be -1 and +1 on the hydrogens.

N2 Molecule

Summary Information of N2

Calculation Method = RB3LYP

Basis Set = 6-31G(d,p)

Final Energy = -109.52412868 a.u.

RMS gradient = 0.00000060 a.u.

Point Group = D∞h

 Item               Value     Threshold  Converged?
 Maximum Force            0.000001     0.000450     YES
 RMS     Force            0.000001     0.000300     YES
 Maximum Displacement     0.000000     0.001800     YES
 RMS     Displacement     0.000000     0.001200     YES

Frequency for N2 = 2457.33 and there are no negative frequencies or charges.

H2 Molecule

Summary Information of H2

Calculation Method = RB3LYP

Basis Set = 6-31G(d,p)

Final Energy = -1.17853936 a.u.

RMS gradient = 0.00000017 a.u.

Point Group = D∞h

 Item               Value     Threshold  Converged?
 Maximum Force            0.000000     0.000450     YES
 RMS     Force            0.000000     0.000300     YES
 Maximum Displacement     0.000000     0.001800     YES
 RMS     Displacement     0.000001     0.001200     YES

Frequency for H2 = 4465.68 and there are no negative frequencies or charges.

ΔE of Haber-Bosch Process

E(NH3) = -56.55776873 a.u.

2*E(NH3) = -113.11553746 a.u.

E(N2) = -109.52412868 a.u.

E(H2) = -1.15928020 a.u.

3*E(H2) = -3.4778406 a.u.

ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.11356818 a.u.

This energy in kj/mol is -298.1732566

From this value, it can be see that he reaction is exothermic and so the ammonia product is more stable.

F2 Molecule

Summary Information of F2

Calculation Method = RB3LYP

Basis Set = 6-31G(d,p)

Final Energy = -199.49825218 a.u.

RMS gradient = 0.000007365 a.u.

Point Group = D*H

 Item               Value     Threshold  Converged?
 Maximum Force            0.000128     0.000450     YES
 RMS     Force            0.000128     0.000300     YES
 Maximum Displacement     0.000156     0.001800     YES
 RMS     Displacement     0.000221     0.001200     YES
F2 Molecule

Only one vibrational mode as it's a linear molecule so 3N-5 rule is applied.

The charges on each F atom is 0 due to it being a diatomic molecule.

F2 Molecular Orbitals

This shows the combination of two 2s AO's which are bonding orbitals. The energy is not too deep but the MO is occupied this will result in strong bonding.

This MO is formed by two degenerate p-orbitals, specifically the 2pz orbitals overlapping. It is not deep in energy, nor is it in the HOMO/LUMO region.

This is 2 anti-bonding p orbitals and don't really interact with the bonding of the molecule

This is the overlap of 2 3p AO's forming a bonding MO. This shows the HOMO of F2 and is relatively low in energy.

This shows the LUMO of F2 and is also low in energy.