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NH3 Molecule Report

NH3 Molecular Properties

NH3
Method Result
Molecule NH3
Calculation RB3LYP
Basis Set 6-31G(d.p)
Energy -56.55776873 Hartree
RMS Gradient 0.00000485
Point Group C3V
NH Bond Length 1.01798 Å
HNH Bond Angle 105.741°

Online Sources had similar values of bond angles[1]

Item Table For Optimised NH3

Item                        Value     Threshold  Converged?
 Maximum Force            0.000004     0.000450     YES
 RMS     Force            0.000004     0.000300     YES
 Maximum Displacement     0.000072     0.001800     YES
 RMS     Displacement     0.000035     0.001200     YES

NH3 Structure

NH3

The optimisation file is linked to here

IR Information

IR Data Table
Question Answer
How many modes do you expect from the 3N-6 rule? 6 modes
Which modes are degenerate (ie have the same energy)? Modes 2 and 3 are degenerate, modes 5 and 6 are also degenerate
Which modes are "bending" vibrations and which are "bond stretch" vibrations? Modes 1, 2 and 3 are bends, Modes 4, 5 and 6 are stretches
Which mode is highly symmetric? Mode 4
One mode is known as the "umbrella" mode, which one is this? Mode 1
How many bands would you expect to see in an experimental spectrum of gaseous ammonia? 2 bands would be visible (the 1089.54 peak and the degenerate 1693.95 peaks), however the other 2 Display Vibrations would still be present but their relative intensities are very small so would not be seen.

The relative intensities of peaks 5 and 6(shown below) can be seen to be much lower than the other stretching and bending peaks.

Display Vibrations of an NH3 Molecule.

When searching for IR Values online, sources confirmed our analysis of which peaks are stretch and bending. [2]

Charge of Nitrogen and Hydrogen on a NH3 Molecule

Charge on NH3
Atom Charge
Nitrogen -1.125eV
Hydrogen 0.375eV

We would expect the nitrogen atom to be more negative than the hydrogen atoms as it is more electronegative. This means the nitrogen will pull electron density towards itself from the hydrogens causing it to be more negative. The sum of all the charge values equals 0 which is what we would expect as NH3 is a neutral molecule.

N2 Molecule Report

N2 Molecular Properties

N2
Method Result
Molecule An N2 Molecule
Calculation RB3LYP
Basis Set 6-31G(d.p)
Energy -109.52412868 Hartrees
RMS Gradient 0.00000060
Point Group DH
N2 Bond Length 1.10550Å
N2 Bond Angle 180°


Item Table For Optimised N2

 Item               Value     Threshold  Converged?
 Maximum Force            0.000001     0.000450     YES
 RMS     Force            0.000001     0.000300     YES
 Maximum Displacement     0.000000     0.001800     YES
 RMS     Displacement     0.000000     0.001200     YES


N2 Structure

N2

The optimisation file is linked to here

IR Information

How many modes do you expect from the 3N-6 rule? Only 1 with a frequency of 2457.33, however since N2 is a homonuclear molecule, there will be no overall change in dipole moment when it symmetrically stretches meaning no peak will be observed.

Display Vibrations of an NH3 Molecule.

N2 Molecule Charges

As you would expect for a homodinuclear molecule, each individual atom has a charge of 0eV as they have the exact same electronegativity so there's no net displacement of electrons.

H2 Molecule Report

H2
Method Result
Molecule H2
Calculation RB3LYP
Basis Set 6-31G(d.p)
Energy -1.17853936 Hartrees
RMS Gradient 0.00000017
Point Group DH
H2 Bond Length 0.74279Å
H2 Bond Angle 180°


Item Table For Optimised H2

Item               Value     Threshold  Converged?
 Maximum Force            0.000000     0.000450     YES
 RMS     Force            0.000000     0.000300     YES
 Maximum Displacement     0.000000     0.001800     YES
 RMS     Displacement     0.000001     0.001200     YES

H2 Structure

H2

The optimisation file is linked to here

IR Information

How many modes do you expect from the 3N-6 rule?

We would expect 1 peak from this rule at a frequency of 4465.68. However H2 is a homonuclear molecule so there will be no overall change in dipole moment when it symmetrically stretches meaning no peak will be observed.

Display Vibrations of an NH3 Molecule.

H2 Molecule Charges

As you would expect for a homonuclear molecule, each individual atom has a charge of 0eV as they have the exact same electronegativity as the distribution of electrons is exactly the same on each atom so there's no net charge.

Haber-Bosch Process

Energies

Enthalpy Table
Enthalpy Value / Hartree
E(NH3) -56.55776873
2*E(NH3) -113.1155375
E(N2) -109.52412868
E(H2) -1.17853936
3*E(H2) -3.53561808
ΔE=2*E(NH3)-[E(N2)+3*E(H2)] 0.05579074


Converting Hartree to KJ/mol we get a ΔE value of -146.48 KJ/mol.

F2 Molecule Report

F2 Molecular Properties

F2
Method Result
Molecule F2
Calculation RB3LYP
Basis Set 6-31G(d.p)
Energy -199.49825218 Hartree
RMS Gradient 0.00007365
Point Group DH
F2 Bond Length 1.40281Å
F2 Bond Angle 180° (Linear Molecule)


Item Table For Optimised F2

Item               Value     Threshold  Converged?
 Maximum Force            0.000128     0.000450     YES
 RMS     Force            0.000128     0.000300     YES
 Maximum Displacement     0.000156     0.001800     YES
 RMS     Displacement     0.000221     0.001200     YES

F2 Structure

F2


The optimisation file is linked to here

IR Information

How many modes do you expect from the 3N-6 rule?

We would expect 1 peak from this rule at a frequency of 1065.09. However F2 is a homonuclear molecule so there will be no overall change in dipole moment when it symmetrically stretches meaning no peak will be observed.

Display Vibrations of an NH3 Molecule.

F2 Molecule Charges

As you would expect for a homonuclear molecule, each individual atom has a charge of 0eV as they have the exact same electronegativity meaning that the electrons will be evenly distributed between the atoms so there will be no net charge.

F2 Molecular Orbitals

This is a list of Fluorine's Bonding, Anti-Bonding and Non-Bonding Molecular Orbitals. The list of numbers on the side gives the Molecular Orbital Energies. As Fluorine has a electronic configuration of 1s22s22p5, picturing a molecular orbital diagram we know that it will have 9 occupied Molecular Orbitals which is indicated by the presence of arrows in the blue boxes representing electrons.

List of Fluorine's Molecular Orbitals

2s Sigma Bonding Molecular Orbital

2s Sigma Bonding Molecular Orbital

This is Fluorine's bonding 2s Molecular Orbital which is made up of the Fluorine atoms 2s atomic orbitals combining in phase. It isn't that deep in energy with an energy of -1.33659. It is not the HOMO and does not lie in the HOMO-LUMO region.

2p Sigma Bonding Molecular Orbital

2p Sigma Bonding Molecular Orbital

This is Fluorine's bonding 2p Molecular Orbital which is made up of the Fluorine atoms 2p atomic orbitals overlapping head on and combining. It is not very deep in energy with an energy of -0.58753. It is not the HOMO but it does lie near the HOMO-LUMO region.

2p Sigma Anti-Bonding Molecular Orbital

2p Sigma* Anti-Bonding Molecular Orbital

This is Fluorine's empty anti-bonding 2p sigma* Molecular Orbital which is made up of the Fluorine atoms 2p atomic orbitals overlapping out of phase. It is not very deep in energy with an energy of -0.12679. It is the LUMO and it does lie in the HOMO-LUMO region.

2p Pi Bonding Molecular Orbital

2p Pi Bonding Molecular Orbital

This is Fluorine's occupied bonding 2p Pi Molecular Orbital which is made up of the Fluorine atoms 2p atomic orbitals overlapping in phase. It is not deep in energy with an energy of -0.52332. It isn't the HOMO and lies near the HOMO-LUMO region. Fluorine has another occupied 2p pi Molecular Orbital which is degenerate in energy. These are located orthogonal to each other.

2p Pi Anti-Bonding Molecular Orbital

2p Pi* Anti-Bonding Molecular Orbital

This is Fluorine's occupied anti-bonding 2p Pi* Molecular Orbital which is made up of the Fluorine atoms 2p atomic orbitals overlapping out of phase. It is not deep in energy with an energy of -0.39190. It is the HOMO and lies in the HOMO-LUMO region. Fluorine has another occupied 2p pi* Molecular Orbital which is degenerate in energy. These are located orthogonal to each other. Due to the presence of the filled Pi* Molecular Orbitals, the F2 molecule does not have a Pi bond as they the Pi* cancel out the Pi Molecular Orbitals.

  1. Molecular Geometry and Bonding Theories, Molecular Geometry and Bonding Theories, https://www.pearsonhighered.com/blbmw13einfo/assets/pdf/blbmw-ch09.pdf, 350-351
  2. Silverstein, R.M.; Bassler, G.C.; and Morrill, T.C. Spectrometric Identification of Organic Compounds. 4th ed. New York: John Wiley and Sons, 1981