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NH3 molecule

General data

NH3 caption
molecule name NH3
N-H bond length 1.01798Å
H-N-H bond angle 105.741º
calculation method RB3LYP
basis set 6-31G(d,p)
final energy E in atomic units (au) -56.44397188
point group C3V

Item table

Item               Value     Threshold  Converged?
 Maximum Force            0.000004     0.000450     YES
 RMS     Force            0.000004     0.000300     YES
 Maximum Displacement     0.000072     0.001800     YES
 RMS     Displacement     0.000035     0.001200     YES

Jmol animation

Optimised NH

Media:DY_NH3_OPTIMISATION_POP.LOG

Vibration modes of NH3

The NH3 molecule is expected to have 6 modes according to the 3N-6 rule for non-symmetric particles.

As can be seen from the screen shot, Mode 2 and 3 are degenerate ,as well as Mode 5 and 6.

Mode 1,2,3 are bending vibrations due to the low frequency while Mode 4,5,6 are stretching vibrations.

Mode 4 is highly symmetric. Mode 1 is also called umbrella due to its unique movements. 4 bands would be seen in an experimental spectrum of gaseous ammonia

Particle charge on NH3

Atom Charge
H +0.375
N -1.125

Since Nitrogen is more electronegative than Hydrogen, electrons between Nitrogen and Hydrogen tends to move closer to the Nitrogen atom. Therefore, charge on the Nitrogen is more negative, while Hydrogen is more positive.

H2 molecule

General data

H2 caption
molecule name H2
H-H bond length 0.74279Å
H-N-H bond angle 180º
calculation method RB3LYP
basis set 6-31G(d,p)
final energy E in atomic units (au) -1.17853936
point group D*H

Item table

Item               Value     Threshold  Converged?
 Maximum Force            0.000000     0.000450     YES
 RMS     Force            0.000000     0.000300     YES
 Maximum Displacement     0.000000     0.001800     YES
 RMS     Displacement     0.000001     0.001200     YES

Jmole animation

Optimised NH

Media:DY_H2_OPTIMISATION_POP.LOG

Vibration modes of H2

Particle charge on H2

It is a linear diatomic molecule, the two atoms are of the same element, therefore, they have the same electonegativity and the charge is hence zero.

N2 molecule

General data

N2 caption
molecule name N2
H-H bond length 1.0550Å
H-N-H bond angle 180º
calculation method RB3LYP
basis set 6-31G(d,p)
final energy E in atomic units (au) -109.52412868
point group D*H

Item Table

        Item               Value     Threshold  Converged?
 Maximum Force            0.000001     0.000450     YES
 RMS     Force            0.000001     0.000300     YES
 Maximum Displacement     0.000000     0.001800     YES
 RMS     Displacement     0.000000     0.001200     YES

Jmole animation

Optimised NH

Media:DY_N2_OPTIMISATION_POP.LOG

Vibration modes of N2

Particle charge on N2

It is a linear diatomic molecule, the two atoms are of the same element, therefore, they have the same electonegativity and the charge is hence zero.

Reaction energy

Haber process is a reaction that is widely used in the industry in order to converts Hydrogen and Nitrogen into Ammonia.

N2 + 3H2--> 2NH3

Energy in atomic unit(au)
H2 -1.17853936
N2 -109.52412868
NH 3 -56.55776873
ΔE=2*E(NH3)-[E(N2)+3*E(H2)] -0.0557907

ΔE=-0.0557907 au=-146.48 KJ/mol

Since the energy of Ammonia is lower, it is more stable.

Methane CH4 Molecule

General data

CH4 caption
molecule name CH4
C-H bond length 1.09197Å
H-C-H bond angle 109.47122º
calculation method RB3LYP
basis set 6-31G(d,p)
final energy E in atomic units (au) -40.52401404
point group TD

Item Table

 Item               Value     Threshold  Converged?
 Maximum Force            0.000063     0.000450     YES
 RMS     Force            0.000034     0.000300     YES
 Maximum Displacement     0.000179     0.001800     YES
 RMS     Displacement     0.000095     0.001200     YES

Jmol animation

Optimised NH

Media:DY_CH4_OPTIMISATION_POP.LOG

Vibration modes of CH4

Methane Molecule is expected to have 9 modes according to the 3N-6 rule.

As can be seen from the screen-shot above, Mode 1,2 and 3 are degenerate bending vibrations. Mode 4,5 and 6 are also degenerate, however, mode 4 and 5 are symmetric bending vibrations while mode 6 is a symmetric stretching vibration. Mode 7, 8 and 9 are degenerate as well but these are stretching vibrations.

Particle Charge on CH4

Atom Charge
C -0.930
H +0.233

Methane is a polar molecule. Carbon atom is slightly more electronegative than Hydrogen, therefore, electrons tend to be closer to the central carbon centre. Hence, Carbon has a negative charge of -0.930 while Hydrogen atoms have a positive charge of +0.233.

Molecular orbitals

This is the 1s orbital of the Carbon atom. It is an occupied orbital but not combined orbital since electrons in the hydrogen atom doesn't contribute anything. The orbital is deep in energy since the energy, as shown, is negative.

This MO is generated by combining the 2s orbital of the Carbon atom and the 1s orbital of the hydrogen atom. It is an occupied orbital which is deep in energy. This is due to the relatively high negative energy as shown on the screen-shot. The MO is also formed as a bonding orbital since the s-orbitals from the carbon atom and the hydrogen atom doesn't cancel each other out.

These 3 MOs are degenerate as can be seen from the screen-shot. They are generated by combing the 2p orbital of the carbon atom with the 1s orbital of the hydrogen atom. 3 MO can be formed since p-orbital has 3 different arrangements. These three MOs are in the HOMO because they have the highest energy within all the occupied orbitals as shown on the picture. All the 3 orbitals are bonding orbitals and they tighten the chemical bond of the Molecule.