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Rep:Mod:AMBS96

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I investigated the energetics of the Haber process. To do this, I optimised molecules of NH3, N2 and H2 using Gaussview. I then extracted the molecular information including charge, bond length, bond length and vibration properties and at the dynamic images for all three. We used the energy values to calculate the energy change of the Haber-Bosch process. I then analysed CH3OH and itt molecular orbitals and the charge on the atoms.

Ammonia Molecule

File Name:	ASmith_NH3_Molecule_Optimisation

File Type:	.log

Calculation Type:	FREQ

Calculation Method:	RB3LYP

Basis Set:	6-31G(d,p)

Charge:	0

Spin:	Singlet

E(RB3LYP):	-56.55776873	 a.u.

RMS Gradient Norm:	0.00000485	 a.u.

Imaginary Freq:	0

Dipole Moment:	1.8466	 Debye

Point Group:	C3V

N-H Bond Length: 1.01798 Å

H-N-H Bond Angle: 105.741 degrees
 Item                  Value     Threshold  Converged?
 Maximum Force         0.000004     0.000450     YES
 RMS     Force         0.000004     0.000300     YES
 Maximum Displacement  0.000072     0.001800     YES
 RMS     Displacement  0.000035     0.001200     YES
 Predicted change in Energy=-5.986265D-10
 Optimization completed.
    -- Stationary point found.
                           ----------------------------
                           !   Optimized Parameters   !
                           ! (Angstroms and Degrees)  !
 --------------------------                            --------------------------
 ! Name  Definition              Value          Derivative Info.                !
 --------------------------------------------------------------------------------
 ! R1    R(1,2)                  1.018          -DE/DX =    0.0                 !
 ! R2    R(1,3)                  1.018          -DE/DX =    0.0                 !
 ! R3    R(1,4)                  1.018          -DE/DX =    0.0                 !
 ! A1    A(2,1,3)              105.7412         -DE/DX =    0.0                 !
 ! A2    A(2,1,4)              105.7412         -DE/DX =    0.0                 !
 ! A3    A(3,1,4)              105.7412         -DE/DX =    0.0                 !
 ! D1    D(2,1,4,3)           -111.8571         -DE/DX =    0.0                 !
 --------------------------------------------------------------------------------
 GradGradGradGradGradGradGradGradGradGradGradGradGradGradGradGradGradGrad

NH3 Optimisation Graphs


NH3 LOG File And jmolApplet

Optimised NH3 Molecule

File:ASMITH NH3 MOLECULE OPTIMISATION.LOG

NH3 Display Vibrations

Questions

How many modes do you expect from the 3N-6 rule? 6 - (3x4)-6

Which modes are degenerate (ie have the same energy)? 2&3, 5&6

Which modes are "bending" vibrations and which are "bond stretch" vibrations? Bending: 1, 2, 3 Bond Stretch: 4, 5, 6

Which mode is highly symmetric? 4

One mode is known as the "umbrella" mode, which one is this? 1

How many bands would you expect to see in an experimental spectrum of gaseous ammonia? I would expect to see 2 bands in the experimental spectrum for the 6 vibrational modes of gaseous ammonia due to there being 2 peaks with a high enough relative intensity (Y-axis value) to be seen. The peaks with the low intensity are due to a small change in the dipole moment when the bond vibrates.

Charge Distribution For Ammonia


Charge On N: -1.125

Charge On H: 0.375

I would expect the Nitrogen to have a negative charge and the Hydrogen to have a positive charge due to Nitrogen having a higher electronegativity.

H2 Molecule

File Name	ASMITH_H2_Optimisation
File Type	.log
Calculation Type	FREQ
Calculation Method	RB3LYP
Basis Set	6-31G(d,p)
Charge	0
Spin	Singlet
E(RB3LYP)	-1.17853936
RMS Gradient Norm	0.00000017
Imaginary Freq	0
Dipole Moment	0.0000
Point Group	D*H
H2 Bond Length: 0.74279 Å
H2 Bond Angle: 180 degrees
  Item                    Value     Threshold  Converged?
 Maximum Force            0.000000     0.000450     YES
 RMS     Force            0.000000     0.000300     YES
 Maximum Displacement     0.000000     0.001800     YES
 RMS     Displacement     0.000001     0.001200     YES
 Predicted change in Energy=-1.164080D-13
 Optimization completed.
    -- Stationary point found.
                           ----------------------------
                           !   Optimized Parameters   !
                           ! (Angstroms and Degrees)  !
 --------------------------                            --------------------------
 ! Name  Definition              Value          Derivative Info.                !
 --------------------------------------------------------------------------------
 ! R1    R(1,2)                  0.7428         -DE/DX =    0.0                 !
 --------------------------------------------------------------------------------
 GradGradGradGradGradGradGradGradGradGradGradGradGradGradGradGradGradGrad

H2 Optimisation Graphs

H2 LOG File And jmolApplet

Optimised H2 Molecule

File:ASMITH H2 OPTIMISATION.LOG

H2 Display Vibrations

N2 Molecule

File Name	ASMITH_N2_Optimisation
File Type	.log
Calculation Type	FREQ
Calculation Method	RB3LYP
Basis Set	6-31G(d,p)
Charge	0
Spin	Singlet
E(RB3LYP)	-109.52412868	 a.u.
RMS Gradient Norm	0.00000060	 a.u.
Imaginary Freq	0
Dipole Moment	0.0000	 Debye
Point Group	D*H
N2 Bond Length: 1.10550 Å
N2 Bond Angle: 180 degrees

         Item               Value     Threshold  Converged?
 Maximum Force            0.000001     0.000450     YES
 RMS     Force            0.000001     0.000300     YES
 Maximum Displacement     0.000000     0.001800     YES
 RMS     Displacement     0.000000     0.001200     YES
 Predicted change in Energy=-3.401071D-13
 Optimization completed.
    -- Stationary point found.
                           ----------------------------
                           !   Optimized Parameters   !
                           ! (Angstroms and Degrees)  !
 --------------------------                            --------------------------
 ! Name  Definition              Value          Derivative Info.                !
 --------------------------------------------------------------------------------
 ! R1    R(1,2)                  1.1055         -DE/DX =    0.0                 !
 --------------------------------------------------------------------------------
 GradGradGradGradGradGradGradGradGradGradGradGradGradGradGradGradGradGrad

N2 Optimisation Graphs


N2 LOG File And jmolApplet

Optimised N2 Molecule

File:ASMITH N2 OPTIMISATION.LOG

N2 Display Vibrations


Haber-Bosch Reaction Energy

N2 + 3h2--> 2NH3

E(NH3)= -56.55776873 a.u.

2*E(NH3)= -56.55776873 a.u.

E(N2)= -109.52412868 a.u.

E(H2)= -1.17853936 a.u.

3*E(H2)= -3.53561808 a.u.

ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.05579074 a.u.

ΔE= -0.05579074 x 2625.5 = -146.4785879 kJ/mol.

A ΔE value of -146.4785879 kJ/mol indicated that energy is released when H2 and N2 are reacted to form NH3. Therefore Ammonia is more stable than a mixture of H2 and N2 gas.

A literature value[1] gives the enthalpy change of formation of Ammonia to be -9.34 (±0.01) kcal/mol or -39.08 kj/mol. This could be different due to temperature/pressure and solvation effects during the reaction.

CH3OH Molecule

File Name:	ASMITH_CH3OH_Optimisation

File Type:	.log

Calculation Type:	FREQ

Calculation Method:	RB3LYP

Basis Set:	6-31G(d,p)

Charge:	0

Spin:	Singlet

E(RB3LYP):	-115.72396437	 a.u.

RMS Gradient Norm:	0.00001494	 a.u.

Imaginary Freq:	0

Dipole Moment:	1.6635	 Debye

Point Group:	C1


Item               Value     Threshold  Converged?
 Maximum Force            0.000038     0.000450     YES
 RMS     Force            0.000020     0.000300     YES
 Maximum Displacement     0.000338     0.001800     YES
 RMS     Displacement     0.000153     0.001200     YES
 Predicted change in Energy=-1.480106D-08
 Optimization completed.
    -- Stationary point found.
                           ----------------------------
                           !   Optimized Parameters   !
                           ! (Angstroms and Degrees)  !
 --------------------------                            --------------------------
 ! Name  Definition              Value          Derivative Info.                !
 --------------------------------------------------------------------------------
 ! R1    R(1,2)                  1.1006         -DE/DX =    0.0                 !
 ! R2    R(1,3)                  1.093          -DE/DX =    0.0                 !
 ! R3    R(1,4)                  1.1006         -DE/DX =    0.0                 !
 ! R4    R(1,5)                  1.4181         -DE/DX =    0.0                 !
 ! R5    R(5,6)                  0.9652         -DE/DX =    0.0                 !
 ! A1    A(2,1,3)              107.8992         -DE/DX =    0.0                 !
 ! A2    A(2,1,4)              108.2583         -DE/DX =    0.0                 !
 ! A3    A(2,1,5)              112.8281         -DE/DX =    0.0                 !
 ! A4    A(3,1,4)              107.8997         -DE/DX =    0.0                 !
 ! A5    A(3,1,5)              106.9041         -DE/DX =    0.0                 !
 ! A6    A(4,1,5)              112.8274         -DE/DX =    0.0                 !
 ! A7    A(1,5,6)              107.7375         -DE/DX =    0.0                 !
 ! D1    D(2,1,5,6)             61.5104         -DE/DX =    0.0                 !
 ! D2    D(3,1,5,6)            179.9639         -DE/DX =    0.0                 !
 ! D3    D(4,1,5,6)            -61.5824         -DE/DX =    0.0                 !
 --------------------------------------------------------------------------------
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CH3OH Optimisation Graphs

H2 LOG File And jmolApplet

Optimised H2 Molecule

File:ASMITH CH3OH OPTIMISATION.LOG

CH3OH Display Vibrations


Charge Distribution For CH3OH


Charge On C: -0.317

Charge On O: -0.747

Charge On CH: 0.188,0.188,0.215 - One of the hydrogens has a different value compared to the other 2 due to the hydrogen with the higher charge being closer to the Oxygen. The other 2 hydrogens are in equivalent positions and therefore have the same charge.

Charge On OH: 0.473 - The charge on this hydrogen is higher than the hydrogens attached to the carbon atom due to the Oxygen having a higher electronegativity.

CH3OH MO's

MO 3 shows the bonding molecular orbital as a result of the overlap of: 2s AO overlap between C and O. The MO is occupied.

MO 4 shows the antibonding molecular orbital of MO 3. This is due to: The overlap of the 2s orbital on the C and the 2s orbital on the O. This gives an antibonding MO due to the 2s orbitals being out of phase. The MO is occupied. The orbital plot shows a large amount of electron density around the Carbon. This is strange as this would be expected for the oxygen instead due to it having a higher electronegativity. The larger MO plot on the carbon could be due to the bonds between the Carbon and the Hydrogens which would give an area of high electron density.

MO 5 shows the bonding molecular orbital as a result of the overlap of: Overlap of 2py AO on the C and 2py AO on the O. The MO is occupied.

MO 8 shows the antibonding molecular orbital of MO 5 as a result of the overlap of: Overlap of 2py AO on the C and 2py AO on O which are out of phase. The MO is occupied.

MO 6 shows the bonding molecular orbital as a result of the overlap of: 2pz AO on the C and the 2pz AO on the O. The MO is occupied.

MO 9 shows the antibonding molecular orbital of 6 as a result of the overlap of: 2pz AO on the C and the 2pz AO on the O which are out of phase with each other. This is the HOMO.

This is the LUMO. The plot looks strange and is hard to interpret.

References

  1. G A Petersson John Mantzaris Journal of the American Chemical Society. , 1991, Vol.113(7), p.2486-2490