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Rep:Mod:01336581

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Molecular Models 2

Robert Kinnier Wilson 01336581

NH3

Molecule: NH3

Calculation method: RB3LYP

Basis set: 6-31G(d,p)

Final energy: -56.55776873a.u.

RMS gradient: 0.00000485a.u

Point group: C3V

N-H bond distance: 1.018Å

H-N-H bond angle: 105.7°

  Item                    Value        Threshold    Converged?
 Maximum Force            0.000004     0.000450     YES
 RMS     Force            0.000004     0.000300     YES
 Maximum Displacement     0.000072     0.001800     YES
 RMS     Displacement     0.000035     0.001200     YES
 Predicted change in Energy=-5.986278D-10
 Optimization completed.
NH3

File:Rlk3917 NH3 OPTF POP.LOG

Number of modes from 3N-6: 6. Modes 2&3 and 5&6 are degenerate. These correspond to two bending modes and two stretching modes. Modes 1 to 3 are bending modes, modes 4 to 6 are stretching modes. Mode 4 is highly symmetric. It is the mode with all three N-H bonds stretching equally. Mode 1 is the "umbrella" mode. An experimental IR spectrum of gaseous ammonia will show 2 absorption bands. The other stretches have a change in dipole moment that is too small to discern a peak on an experimental spectrum.

The charge on the hydrogen atoms is +0.375. The charge on the nitrogen is -1.125. This is consistent with expectations, as nitrogen is more electronegative than hydrogen.

N2

Molecule: N2

Calculation method: RB3LYP

Basis set: 6-31G(d,p)

Final energy: -109.52412868a.u.

RMS gradient: 0.00000060a.u

Point group: Dinfh

N-N bond length: 1.106Å

Item                      Value        Threshold    Converged?
 Maximum Force            0.000001     0.000450     YES
 RMS     Force            0.000001     0.000300     YES
 Maximum Displacement     0.000000     0.001800     YES
 RMS     Displacement     0.000000     0.001200     YES
 Predicted change in Energy=-3.400975D-13
 Optimization completed.
N2

File:RLK3917 N2.LOG

The charge is distributed evenly across the molecule, as the nitrogen atoms have the same electronegativity.

H2

Molecule: H2

Calculation method: RB3LYP

Basis set: 6-31G(d,p)

Final energy: -1.17853936a.u.

RMS gradient: 0.00000017a.u.

Point group: Dinfh

H-H bond length: 0.743Å

Item                      Value        Threshold    Converged?
 Maximum Force            0.000000     0.000450     YES
 RMS     Force            0.000000     0.000300     YES
 Maximum Displacement     0.000000     0.001800     YES
 RMS     Displacement     0.000001     0.001200     YES
 Predicted change in Energy=-1.164080D-13
 Optimization completed.
    -- Stationary point found.
H2

File:RLK3917 H2.LOG

The charge is distributed evenly across the molecule, as the hydrogen atoms have the same electronegativity.

Energies of the Haber-Bosch Process

E(NH3)= -56.55776873a.u.

2×E(NH3)= -113.11553746a.u.

E(N2)= -109.52412868a.u.

E(H2)= -1.17853936a.u.

3*E(H2)= -3.53561808a.u.

ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.05579070a.u.

ΔE= -146.5kJ/mol

Since the energy change of this reaction is negative, the product (ammonia) must be more stable than the reactants (hydrogen and nitrogen).

A small molecule: Phosphorous

Molecule: P2

Calculation method: RB3LYP

Basis set: 6-31G(d,p)

Final energy: -682.68894541a.u.

RMS gradient: 0.00000021a.u.

Point group: Dinfh

P-P bond length: 1.904Å

Item                      Value        Threshold    Converged?
 Maximum Force            0.000000     0.000450     YES
 RMS     Force            0.000000     0.000300     YES
 Maximum Displacement     0.000000     0.001800     YES
 RMS     Displacement     0.000001     0.001200     YES
 Predicted change in Energy=-1.816599D-13
 Optimization completed.
P2

File:RLK3917 P2.LOG

Phosphorous Molecular Orbitals

g:

The 3σg is the orbital formed by the bonding overlap between the 2pz orbitals in an end to end manner. Although deeper in energy than the valence orbitals, at -4.74a.u., this orbital has a small influence in bonding, as shown by the small amount of electron density connecting the green lobes along the bond.


u*:

The 4σu* is an anti-bonding orbital formed from the out of phase overlap of the 3s orbitals. It has an energy of -0.467a.u. This orbital shows clearly the nodal plane perpendicular to the bond axis that is characteristic of anti-bonding orbitals.


g

The 5σg is a bonding orbital formed from the overlap of the 3pz orbitals in a similar way to the 3σg orbital. This orbital it larger than the 3σg orbital, because the 3p atomic orbitals are larger than the 2p atomic orbitals, but of the same form. The 5σg has an energy of -0.298a.u.


u

The 2πu orbital is a bonding orbital formed from the overlap of the 3px or 3py orbitals side to side. Since the 3p orbitals are degenerate, the two π orbitals are degenerate as well. This orbital is the HOMO for the molecule, with an energy of -0.287a.u. The HOMO is quite high in energy, which leads to the relative instability of P2 compared to the preferred P4. The nodal plane of this orbital is parallel to the bond axis.

g*

The 2πg* orbital is an anti-bonding orbital formed from the overlap of the 3px or 3py orbitals side to side. This orbital is the LUMO for the molecule, with an energy of -0.101a.u. This orbital has two nodal planes; 1 parallel to the bond axis and 1 perpendicular.