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A Gaussview image of an optimised benzene molecule.
A Gaussview image of an optimised benzene molecule.
test molecule

The optimisation file is liked to here

The quick brown fox jumps over the lazy dog.[1]
  1. This is the lazy dog reference.
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cell cell
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Cell 1 Cell 2 Cell 3
Cell A Cell B Cell C
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Information
More Info
Column 1 Column 2 Column 3
A B
C D
E
F
G

Ammonia, NH3

test molecule

Properties

NH3 optimised bond length= 1.01798 Angstroms

NH3 optimised bond angle=105.741 degrees

Calculation type=FREQ

Calculation method=RB3LYP

Point group=C3v

E(RB3LYP)= -56.55776873au

Basis set= 6-31G (d.p)


         Item               Value     Threshold  Converged?
 Maximum Force            0.000004     0.000450     YES
 RMS     Force            0.000004     0.000300     YES
 Maximum Displacement     0.000070     0.001800     YES
 RMS     Displacement     0.000033     0.001200     YES
 RMS     Displacement     0.000824     0.001200     YES

The optimisation file is linked to SAMUELJONES NH3 OPT COMPPHYS.log

Vibrations

Vibrational modes

Using the 3N-6 rule, I would expect ammonia to have 6 modes ((3x4)-6), which it does. Modes 2 and 3 and modes 5 and 6 are degenerate, as they have the same frequency of vibration.

Mode 4 is highly symmetric, as it is a symmetric stretch of all 3 N-H bonds. The umbrella mode is probably mode 1, as the molecule looks like it turns inside-out, like an umbrella in the wind. I would expect to see 4 bands in an IR spectrum of NH3(g), as 2 pairs of vibrational modes are degenerate.

Charges and charge distribution

On the N atom, there is a charge of -1.125 and on each H, there is a charge of 0.375. I would have expected a charge of zero on both if the bond was truly covalent, but I know that N has a higher electronegativity than H, so it will draw electron density towards itself.





N2

Information

Bond length= 1.10550 Angstroms

         Item               Value     Threshold  Converged?
 Maximum Force            0.000001     0.000450     YES
 RMS     Force            0.000001     0.000300     YES
 Maximum Displacement     0.000000     0.001800     YES
 RMS     Displacement     0.000000     0.001200     YES

Point group=D∞h

Vibrational modes for ammonia
Mode Type of vibration
1 Symmetric bend
2 Asymmetric bend
3 Asymmetric bend
4 Symmetric stretch
5 Asymmetric stretch
6 Asymmetric stretch
From the 3N-5 rule, I expected there to be 1 vibrational mode (3x2)-5=1 vibrational mode (and there was). The optimisation file is linked to SamuelJones N2 opt.log

H2

Bond length= 0.74279 Angstroms

Point group=D∞h

Vibrational modes for nitrogen
Mode Type of vibration Frequency/Hz
1 Symmetric stretch 2457.33
From the 3N-5 rule, I expected there to be 1 vibrational mode (and there was). The optimisation file is linked to SAMUELJONES H2 OPT.log

The Haber Process

N2(g)+3H2(g)--->2NH3(g)

Energy of reaction/au

E(NH3(g))=

2E(NH3(g))=

E(N2(g))=

E(H2(g))=

3E(H3(g))=

ΔE=2E(NH3(g))-[E(N2(g))-3E(H2(g))]=

Energy of reaction/kJmol-1

E(NH3(g))=

2E(NH3(g))=

E(N2(g))=

E(H2(g))=

3E(H3(g))=

ΔE=2E(NH3(g))-[E(N2(g))-3E(H2(g))]=


The products are more stable, as the enthalpy change of the reaction is negative, which means that the bonds formed are stronger than those broken to form them.

Molecular orbital diagrams

Molecule of my choice

CO2(g)

Information

Linear Point group=D∞h Optimisation

Vibrational modes

Based on the 3N-5 rule, I expected there to be 4 vibrational modes ((3x3)-5), which there were.

Energy change of formation

C(s)(graphite)+O2(g)--->CO2(g)

E(C(s))(graphite))=

E(O2(g))=

E(CO2(g))=

ΔE=E(CO2(g))-(E(O2(g))+E(C(s))(graphite)))



Extra molecule

Information

Vibrational modes for hydrogen
Mode Type of vibration Frequency/Hz
1 Symmetric stretch 4465.68