Mod:Hunt Research Group/Jan dipole
Appearance
dipole moment
- the script we need is dipole.py which can be found in repESP/scripts directory
- this script calculates the dipole moment based on information from NBO or other charges
- use "dipole.py -h" to obtain more information
- we need 3 basic arguments,
- input charge type= "list" the charges are in a text file (ie from resp/average) or the name the raw charges to be extracted
- intput charge file = file to extract charges from this can be a gaussian.log file or the text file if you have used resp
- esp file = name of file with the esp fitting points, this is only used to determine the geometry ie xyz coords
- for example mk charges
1 C 0.174709
2 H 0.056552
3 H -0.008412
4 H -0.008391
5 O -0.605637
6 H 0.391179
dipole.py mk ch3oh_mk.log ch3oh_mk.esp X: 0.818605 Y: -1.485325 Z: -0.000097 TOT: 1.695967
- or resp mk charges
0.107929 0.030521 0.030521 0.030521 -0.588728 0.389236
dipole.py list resp_mk_charges.txt ch3oh_mk.esp X: 0.807061 Y: -1.788265 Z: 0.000018 TOT: 1.961948