Rdm:nmr-bruker

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Revision as of 14:21, 6 March 2020 by Rzepa (Talk | contribs) (Retrieving an NMR data file from the Bruker Spectrometers)

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Retrieving an NMR data file from the Bruker Spectrometers

  1. step 3
    On Windows 10, from the Software Hub panel, firstly select a chemistry filter
    1. If you cannot see anything relating to the software hub, open a Web Browser and type: https://softwarehub.imperial.ac.uk/login as the URL and proceed to log in using your Imperial Credentials.
    2. step 4
      From the list of chemistry programs (33) invoke MestreNova. Use the latest version (14).
  2. On Windows 10, type run into the search box at the bottom left.
    1. step 2a
      In the run box, type (or copy/paste)
      \\ch-nmrserv2.ch.ic.ac.uk\Av400D\ug1\nmr
      and navigate down through to the folder allocated to your spectrum.
    2. If this server does not respond, try instead one of
      \\icnfs3.cc.ic.ac.uk\ch-nmr\Av400D\ug1\nmr
      \\ch-nmrserv3.ch.ic.ac.uk\Av400D\ug1\nmr
  3. On MacOS, invoke Go/Connect to server from the Finder menus at the top and type e.g. smb://ch-nmrserv2.ch.ic.ac.uk/Av400D/ug1/nmr (followed by your College username and password)
  4. The location of your file is shown on the submission sheet for your week in Blackboard.
    1. step 4a
      Alternatively, you can find your file from the date (week) submitted and by inspection of your initials associated with a spectrum.
    2. step 4a
      A way of checking your spectrum is to drag-n-drop a prospective folder (with a name such as 10 and with the correct date) into the MestreNova window.
    3. step 4a
      A spectrum will appear and initials will be shown in the top left of the spectrum. Continue until you find a spectrum with your initials.
  5. step 2b
    Once you have found your folder, select that folder, right click to get the menu shown, from which you invoke Send To and then Compressed (zipped) folder. It will ask you Do you want it to be placed on the desktop itself? to which you reply Yes.
    1. You can next Drag-n-drop the Bruker .zip data file from the Desktop into the MestreNova window.
  6. step 5
    A spectrum will (again) appear. Check again it has your initials associated with it.
  7. step65
    When you have finished inspecting the spectrum, save the data file using Save as as a .mnova file and optionally repeat for a .jdx format. Take care to note where you are saving the files (on the desktop in this example).

You will now have all the files you need to make your data deposition (a .zip file, and optionally a .mnova and .jdx file, along with the chemdraw .cdxml file you prepared earlier). A minimum of two files.


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