User contributions for Phunt
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21 April 2019
- 07:1707:17, 21 April 2019 diff hist +3 Talk:Mod:Hunt Research Group/Starting MD No edit summary
- 07:1707:17, 21 April 2019 diff hist −1 Talk:Mod:Hunt Research Group/Starting MD →now prepare file to run (energy relax) your simulation
- 07:1107:11, 21 April 2019 diff hist +13 Talk:Mod:Hunt Research Group/EquilibrationandProduction No edit summary
- 07:1007:10, 21 April 2019 diff hist +1 Mod:Hunt Research Group/nvt eq mdp file No edit summary
- 07:0907:09, 21 April 2019 diff hist 0 Mod:Hunt Research Group/nvt eq mdp file No edit summary
- 07:0907:09, 21 April 2019 diff hist +17 Talk:Mod:Hunt Research Group/EquilibrationandProduction No edit summary
- 07:0207:02, 21 April 2019 diff hist +73 Talk:Mod:Hunt Research Group/EquilibrationandProduction →NVT
- 07:0207:02, 21 April 2019 diff hist +67 Talk:Mod:Hunt Research Group/EquilibrationandProduction →NVT
- 07:0007:00, 21 April 2019 diff hist +2 Mod:Hunt Research Group/nvt eq mdp file No edit summary
- 06:5906:59, 21 April 2019 diff hist +13 Mod:Hunt Research Group/nvt eq mdp file No edit summary
- 06:5906:59, 21 April 2019 diff hist +900 N Mod:Hunt Research Group/nvt eq mdp file Created page with ";nvt part of equilibarion ;run control integrator = md dt = 0.001 nsteps = 10000 ;output control nstlog = 100 nst..."
- 06:5906:59, 21 April 2019 diff hist +117 Talk:Mod:Hunt Research Group/EquilibrationandProduction No edit summary
- 06:5006:50, 21 April 2019 diff hist +82 Talk:Mod:Hunt Research Group/gromacs run →general run commands
- 06:4606:46, 21 April 2019 diff hist +17 Talk:Mod:Hunt Research Group/gromacs run →general run commands
- 06:4506:45, 21 April 2019 diff hist +149 Talk:Mod:Hunt Research Group/gromacs run →general run commands
- 06:4406:44, 21 April 2019 diff hist +45 Talk:Mod:Hunt Research Group/gromacs run →general run commands
- 06:3306:33, 21 April 2019 diff hist +954 Talk:Mod:Hunt Research Group/gromacs viewing MD →view data
- 06:1506:15, 21 April 2019 diff hist +61 Talk:Mod:Hunt Research Group/gromacs viewing MD →view data
- 06:1306:13, 21 April 2019 diff hist +359 Talk:Mod:Hunt Research Group/gromacs viewing MD →view data
- 05:4405:44, 21 April 2019 diff hist +498 N Talk:Mod:Hunt Research Group/gromacs run Created page with "==general run commands== *generate the binary run control file topol.tpr ::mdout.mdp (record and explanation of the options) <pre> gmx grompp -f run1.mdp -c conf.gro -p field..."
- 05:4105:41, 21 April 2019 diff hist −1 Mod:Hunt Research Group →Setup and Running Classical MD Simulations
- 05:4105:41, 21 April 2019 diff hist +7 Mod:Hunt Research Group →Setup and Running Classical MD Simulations
- 05:4005:40, 21 April 2019 diff hist +111 Mod:Hunt Research Group →Setup and Running Classical MD Simulations
- 05:3405:34, 21 April 2019 diff hist +1,546 N Talk:Mod:Hunt Research Group/gromacs viewing MD Created page with "==view data== *data files are compressed so you need to process them to look at the outputs <pre> gmx energy -w </pre> ::will generate the following, now we want to look at th..."
- 05:3305:33, 21 April 2019 diff hist −1,536 Talk:Mod:Hunt Research Group/Starting MD No edit summary
- 05:3205:32, 21 April 2019 diff hist +109 Mod:Hunt Research Group →Setup and Running Classical MD Simulations
- 05:2905:29, 21 April 2019 diff hist +139 Talk:Mod:Hunt Research Group/gromacs control MD →example input current
- 05:2905:29, 21 April 2019 diff hist +274 Talk:Mod:Hunt Research Group/gromacs control MD →description
- 05:1905:19, 21 April 2019 diff hist +1,030 Talk:Mod:Hunt Research Group/gromacs control MD →example input
- 05:1505:15, 21 April 2019 diff hist +3 Talk:Mod:Hunt Research Group/Starting MD →now prepare file to run (energy relax) your simulation
- 05:1005:10, 21 April 2019 diff hist +4 Talk:Mod:Hunt Research Group/Starting MD →now prepare file to run (energy relax) your simulation
- 05:0905:09, 21 April 2019 diff hist +196 Talk:Mod:Hunt Research Group/Starting MD →now prepare file to run (energy relax) your simulation
20 April 2019
- 16:1616:16, 20 April 2019 diff hist +76 Talk:Mod:Hunt Research Group/Starting MD No edit summary
- 16:0616:06, 20 April 2019 diff hist +120 Talk:Mod:Hunt Research Group/Starting MD →create the starting simulation box for your MD package
- 16:0416:04, 20 April 2019 diff hist +199 Mod:Hunt Research Group/packmol 1 →using packmol
- 15:5415:54, 20 April 2019 diff hist 0 Talk:Mod:Hunt Research Group/Starting MD →create the starting simulation box for your MD package
- 15:5315:53, 20 April 2019 diff hist +98 Mod:Hunt Research Group/packmol 1 →example input files
- 15:5115:51, 20 April 2019 diff hist +15 Mod:Hunt Research Group/packmol 1 →example input files
- 15:5015:50, 20 April 2019 diff hist 0 Mod:Hunt Research Group/packmol 1 →using packmol
- 15:4815:48, 20 April 2019 diff hist −18 Mod:Hunt Research Group/ilff →use
- 15:4815:48, 20 April 2019 diff hist +90 Mod:Hunt Research Group/ilff →use
- 15:4315:43, 20 April 2019 diff hist +265 Talk:Mod:Hunt Research Group/Starting MD →now prepare file to run your simulation
- 15:3715:37, 20 April 2019 diff hist +1,374 Talk:Mod:Hunt Research Group/Starting MD No edit summary
- 15:3215:32, 20 April 2019 diff hist +2 Talk:Mod:Hunt Research Group/gromacs energy relax →file
- 15:2715:27, 20 April 2019 diff hist +92 Talk:Mod:Hunt Research Group/Starting MD No edit summary
- 15:2315:23, 20 April 2019 diff hist −1 Talk:Mod:Hunt Research Group/Starting MD No edit summary
- 15:2315:23, 20 April 2019 diff hist +127 Talk:Mod:Hunt Research Group/Starting MD No edit summary
- 15:1915:19, 20 April 2019 diff hist +197 Talk:Mod:Hunt Research Group/Starting MD →create the starting simulation box for your MD package
- 15:1315:13, 20 April 2019 diff hist −83 Talk:Mod:Hunt Research Group/gromacs control MD →example input
- 15:1215:12, 20 April 2019 diff hist +159 Talk:Mod:Hunt Research Group/Starting MD →create the starting simulation box for your MD package