View source for MDR:2Yphyscomplabkk4717

Aiding pages: 
https://wiki.ch.ic.ac.uk/wiki/index.php?title=CP3MD
https://wiki.ch.ic.ac.uk/wiki/index.php?title=Title%3DMod:inorganic_wiki_page_instructions
http://www.huntresearchgroup.org.uk/teaching/teaching_comp_lab_year1/0b_create_a_wiki.html

== Excercise 1 ==

1. On a potential energy surface diagram, how is the transition state mathematically defined? How can the transition state be identified, and how can it be distinguished from a local minimum of the potential energy surface?

2. Report your best estimate of the transition state position (rts) and explain your reasoning illustrating it with a “Internuclear Distances vs Time” plot for a relevant trajectory.

3. Comment on how the mep and the trajectory you just calculated differ.

4. Complete the table above by adding the total energy, whether the trajectory is reactive or unreactive, and provide a plot of the trajectory and a small description for what happens along the trajectory. What can you conclude from the table?

5. State what are the main assumptions of Transition State Theory. Given the results you have obtained, how will Transition State Theory predictions for reaction rate values compare with experimental values?