View source for IT:FAQ:Jmol

== Example 1 of the  Use of  Jmol in  a Wiki: Inlined  XYZ data ==

<jmol>
  <jmolApplet>
<size>100</size>
<color>white</color>
<script>zoom 140; frame 1; vectors on; color vectors yellow; move 10 -20 10 0 0 0 0 0 3; delay 1; vibration 7;animation mode loop;</script>
    <inlineContents>18
chair.mol
C	1.6881	2.1572	-3.0193
C	2.1484	3.6217	-2.9797
C	2.9361	3.9126	-1.6942
C	2.0927	3.5769	-0.4557
C	1.6329	2.112	-0.4898
C	0.8532	1.8102	-1.7778
H	2.5807	1.4887	-3.0652
H	1.0897	1.9711	-3.943
H	1.2578	4.2927	-3.0282
H	2.7791	3.8474	-3.8727
H	3.8725	3.3053	-1.6844
H	3.2413	4.9861	-1.6685
H	1.2005	4.2467	-0.4224
H	2.6835	3.77	0.4714
H	0.9957	1.8928	0.4002
H	2.524	1.4426	-0.4294
H	0.5642	0.7322	-1.8031
H	-0.0919	2.4039	-1.7878
</inlineContents>
  </jmolApplet>
</jmol>

== Example 2  of the  Use of  Jmol in  a Wiki: File  XYZ data ==


<jmol>
  <jmolApplet>
<size>150</size>
<color>cyan</color>
    <UploadedFileContents>Chair.xyz</UploadedFileContents>
  </jmolApplet>
</jmol>

== Example 3 of the  Use of  Jmol in  a Wiki: File  Molfile data ==

[[Special:Filepath|Chair.mol]]
<jmol>
  <jmolApplet>
<size>150</size>
<color>purple</color>
    <UploadedFileContents>Chair4.mol</UploadedFileContents>
  </jmolApplet>
</jmol>

== Example 4  of the  Use of  Jmol in  a Wiki: File  CML data ==

<jmol>
  <jmolApplet>
<size>150</size>
<color>yellow</color>
    <UploadedFileContents>Chair.cml</UploadedFileContents>
  </jmolApplet>
</jmol>

== Example 5 of the  Use of  Jmol in  a Wiki: Inlined  Molfile data ==

<jmol>
  <jmolApplet>
<size>150</size><color>pink</color>
    <inlineContents>Chair
added title
two
 18 18  0  0  0                 1 V2000
    1.6881    2.1572   -3.0193 C   0  0  0  0  0
    2.1484    3.6217   -2.9797 C   0  0  0  0  0
    2.9361    3.9126   -1.6942 C   0  0  0  0  0
    2.0927    3.5769   -0.4557 C   0  0  0  0  0
    1.6329    2.1120   -0.4898 C   0  0  0  0  0
    0.8532    1.8102   -1.7778 C   0  0  0  0  0
    2.5807    1.4887   -3.0652 H   0  0  0  0  0
    1.0897    1.9711   -3.9430 H   0  0  0  0  0
    1.2578    4.2927   -3.0282 H   0  0  0  0  0
    2.7791    3.8474   -3.8727 H   0  0  0  0  0
    3.8725    3.3053   -1.6844 H   0  0  0  0  0
    3.2413    4.9861   -1.6685 H   0  0  0  0  0
    1.2005    4.2467   -0.4224 H   0  0  0  0  0
    2.6835    3.7700    0.4714 H   0  0  0  0  0
    0.9957    1.8928    0.4002 H   0  0  0  0  0
    2.5240    1.4426   -0.4294 H   0  0  0  0  0
    0.5642    0.7322   -1.8031 H   0  0  0  0  0
   -0.0919    2.4039   -1.7878 H   0  0  0  0  0
  1  2  1  0  0  0
  1  6  1  1  0  0
  1  7  1  0  0  0
  1  8  1  6  0  0
  2  3  1  1  0  0
  2  9  1  0  0  0
  2 10  1  6  0  0
  3  4  1  1  0  0
  3 11  1  0  0  0
  3 12  1  0  0  0
  4  5  1  0  0  0
  4 13  1  0  0  0
  4 14  1  1  0  0
  5  6  1  6  0  0
  5 15  1  1  0  0
  5 16  1  0  0  0
  6 17  1  0  0  0
  6 18  1  0  0  0
M  END</inlineContents>
  </jmolApplet>
</jmol>

== Example 6 of the  Use of  Jmol in  a Wiki: Inlined  CML data ==

<jmol>
  <jmolApplet>
<size>150</size><color>pink</color>
    <inlineContents> <![CDATA[ <cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core"
 title="chair.mol">
<cml:metadataList title="generated automatically from Openbabel">
<cml:metadata name="dc:creator" content="OpenBabel version 1-100.1"/>
<cml:metadata name="dc:description" content="Conversion of legacy filetype to CML"/>
<cml:metadata name="dc:identifier" content="Unknown"/>
<cml:metadata name="dc:content"/>
<cml:metadata name="dc:rights" content="unknown"/>
<cml:metadata name="dc:type" content="chemistry"/>
<cml:metadata name="dc:contributor" content="unknown"/>
<cml:metadata name="dc:creator" content="Openbabel V1-100.1"/>
<cml:metadata name="dc:date" content="Tue Jun 06 19:11:23 BST 2006"/>
<cml:metadata name="cmlm:structure" content="yes"/>
</cml:metadataList>
<cml:atomArray atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18" elementType="C C C C C C H H H H H H H H H H H H" formalCharge="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0" x3="1.688100 2.148400 2.936100 2.092700 1.632900 0.853200 2.580700 1.089700 1.257800 2.779100 3.872500 3.241300 1.200500 2.683500 0.995700 2.524000 0.564200 -0.091900" y3="2.157200 3.621700 3.912600 3.576900 2.112000 1.810200 1.488700 1.971100 4.292700 3.847400 3.305300 4.986100 4.246700 3.770000 1.892800 1.442600 0.732200 2.403900" z3="-3.019300 -2.979700 -1.694200 -0.455700 -0.489800 -1.777800 -3.065200 -3.943000 -3.028200 -3.872700 -1.684400 -1.668500 -0.422400 0.471400 0.400200 -0.429400 -1.803100 -1.787800"/>
<cml:bondArray atomRef1="a1 a1 a1 a1 a2 a2 a2 a3 a3 a3 a4 a4 a4 a5 a5 a5 a6 a6" atomRef2="a2 a6 a7 a8 a3 a9 a10 a4 a11 a12 a5 a13 a14 a6 a15 a16 a17 a18" order="1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1"/>
</cml:molecule> ]]></inlineContents>
  </jmolApplet>
</jmol>