# Script to load a file and alter the molecule to CPK
# the file to be loaded is called mol.xyz
# type "play "basic_script"
#
# Display settings
# set the background colour
# all atoms same size=orthographic depth=perspective
# turn off the depth shading
# turn off the axes
color Display Background iceblue
display projection   Orthographic
display nearclip set 0.000000
display farclip  set 10.000000
display depthcue   off
axes location off
#
# read in new molecule
mol new mol.xyz type xyz
#
# deleate top rep ( as it automatically starts up with a lines rep)
mol delrep 0 top
#
# For a simple molecule:
#
# For a standard CPK representation
# add cpk rep to everything
# CPK is VDW and bonds
# sphere_scale=1.1 bond_radius=0.3 sphere_res=20 bond_resolution=16
# select colours material
# apply the changes
mol selection {all}
mol representation CPK 1.100000 0.300000 20.000000 16.000000
mol color Name
mol material Opaque
mol addrep top
#
# set specific atom colours and size
# do this by changing colour redrawing the item
# must do it for each item individually
# all items will be this colour until the colour is changed again
# colorID0=blue
# colorID1=red
# colorID2=grey
# colorID7=green
# colorID8=white
# this is only added OVER the existing representation
mol selection {name C}
mol representation CPK 1.100000 0.300000 20.000000 16.000000
mol color ColorID 2
mol addrep top
#