#to run type "play view_script" from the directory with the script in it
#
# Display settings
color Display Background iceblue
display projection   Orthographic
display nearclip set 0.000000
display farclip  set 10.000000
display depthcue   off
axes location off
#
# read in trajectory
 mol new traj.xyz type xyz
#
# deleate top rep ( as it automatically starts up with a lines rep)
mol delrep 0 top
#
 mol selupdate 0 0 1 
 mol representation DynamicBonds 1.4 0.1 6.0
 mol color Name
 mol material Opaque
 mol addrep top
#
# make water oxygen red (1=red)
mol selection {name O}
mol color ColorID 1
mol representation VDW 0.20 30.0
mol addrep top
#
# make water hydrogen white (8=white)
mol selection {name H}
mol color ColorID 8
mol representation VDW 0.20 30.0
mol addrep top
#
# add in H-bonds (8=white)
# distance cut-off, angle cut-off, line thickness
mol selection {all}
mol color ColorID 8
mol representation HBonds 3.0 30.0 3.0
mol addrep top
#
# select individual water to monitor make this molecule blue
mol selection {index 42 44 43} 
mol color ColorID 0
mol representation VDW 0.5 30.0 
mol addrep top
#