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	<id>https://chemwiki.ch.ic.ac.uk/api.php?action=feedcontributions&amp;feedformat=atom&amp;user=Mra1018</id>
	<title>ChemWiki - User contributions [en]</title>
	<link rel="self" type="application/atom+xml" href="https://chemwiki.ch.ic.ac.uk/api.php?action=feedcontributions&amp;feedformat=atom&amp;user=Mra1018"/>
	<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/wiki/Special:Contributions/Mra1018"/>
	<updated>2026-04-19T13:59:38Z</updated>
	<subtitle>User contributions</subtitle>
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	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=756061</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=756061"/>
		<updated>2019-03-15T14:12:10Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
RMS Gradient: 0.00000485 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Modes: 3461cm-1 and 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52412868 au&lt;br /&gt;
&lt;br /&gt;
RMS Gradient: 0.02473091 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.10550 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
RMS Gradient: 0.00000017 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375 au&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5241287 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0557907 au&lt;br /&gt;
                           = -146.4784829 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;All values are to 7 dp&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, so energy is released. Therefore, the Ammonia gas is ~146.5 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
RMS Gradient: 0.00010485 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly p orbital character. It is an occupied antibonding orbital with sigma* interactions, mainly contributed to by the 2pz orbitals from both Carbon and Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an unoccupied antibonding pi* orbital, and is mainly contributed to by the 2px orbital from Carbon and the 2px orbital from Oxygen, both of which are out of phase. The 2px orbital from Oxygen is very bloated, which could be due to s interactions with the 2px orbital, making it larger than a typical p orbital.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is an occupied bonding pi orbital, and is contributed to by the 2py orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st Molecular Orbital of Carbon Monoxide. It shows s orbital character. It is occupied, and it&#039;s very deep in energy, therefore it cannot take part in bonding. It is almost solely contributed to by the 1s orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== 4th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO(4)Stuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 4th Molecular Orbital of Carbon Monoxide. It shows mainly s character. It is an occupied bonding orbital, and is mainly contributed to by the 2s orbital of Carbon and the 2s orbital of Oxygen, however there is a significant amount of contribution from the 2px orbitals of both Carbon and Oxygen too.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=756048</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=756048"/>
		<updated>2019-03-15T14:08:17Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
RMS Gradient: 0.00000485&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Modes: 3461cm-1 and 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52412868 au&lt;br /&gt;
&lt;br /&gt;
RMS Gradient: 0.02473091&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.10550 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
RMS Gradient: 0.00000017&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5241287 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0557907 au&lt;br /&gt;
                           = -146.4784829 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;All values are to 7 dp&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, so energy is released. Therefore, the Ammonia gas is ~146.5 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly p orbital character. It is an occupied antibonding orbital with sigma* interactions, mainly contributed to by the 2pz orbitals from both Carbon and Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an unoccupied antibonding pi* orbital, and is mainly contributed to by the 2px orbital from Carbon and the 2px orbital from Oxygen, both of which are out of phase. The 2px orbital from Oxygen is very bloated, which could be due to s interactions with the 2px orbital, making it larger than a typical p orbital.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is an occupied bonding pi orbital, and is contributed to by the 2py orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st Molecular Orbital of Carbon Monoxide. It shows s orbital character. It is occupied, and it&#039;s very deep in energy, therefore it cannot take part in bonding. It is almost solely contributed to by the 1s orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== 4th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO(4)Stuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 4th Molecular Orbital of Carbon Monoxide. It shows mainly s character. It is an occupied bonding orbital, and is mainly contributed to by the 2s orbital of Carbon and the 2s orbital of Oxygen, however there is a significant amount of contribution from the 2px orbitals of both Carbon and Oxygen too.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=756041</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=756041"/>
		<updated>2019-03-15T14:04:39Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
RMS Gradient: 0.00000485&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Modes: 3461cm-1 and 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52412868 au&lt;br /&gt;
&lt;br /&gt;
RMS Gradient: 0.02473091&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5241287 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0557907 au&lt;br /&gt;
                           = -146.4784829 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;All values are to 7 dp&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, so energy is released. Therefore, the Ammonia gas is ~146.5 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly p orbital character. It is an occupied antibonding orbital with sigma* interactions, mainly contributed to by the 2pz orbitals from both Carbon and Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an unoccupied antibonding pi* orbital, and is mainly contributed to by the 2px orbital from Carbon and the 2px orbital from Oxygen, both of which are out of phase. The 2px orbital from Oxygen is very bloated, which could be due to s interactions with the 2px orbital, making it larger than a typical p orbital.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is an occupied bonding pi orbital, and is contributed to by the 2py orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st Molecular Orbital of Carbon Monoxide. It shows s orbital character. It is occupied, and it&#039;s very deep in energy, therefore it cannot take part in bonding. It is almost solely contributed to by the 1s orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== 4th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO(4)Stuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 4th Molecular Orbital of Carbon Monoxide. It shows mainly s character. It is an occupied bonding orbital, and is mainly contributed to by the 2s orbital of Carbon and the 2s orbital of Oxygen, however there is a significant amount of contribution from the 2px orbitals of both Carbon and Oxygen too.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755818</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755818"/>
		<updated>2019-03-15T12:07:17Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* Molecule */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52412868 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5241287 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0557907 au&lt;br /&gt;
                           = -146.4784829 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;All values are to 7 dp&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, so energy is released. Therefore, the Ammonia gas is ~146.5 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly p orbital character. It is an occupied antibonding orbital with sigma* interactions, mainly contributed to by the 2pz orbitals from both Carbon and Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an unoccupied antibonding pi* orbital, and is mainly contributed to by the 2px orbital from Carbon and the 2px orbital from Oxygen, both of which are out of phase. The 2px orbital from Oxygen is very bloated, which could be due to s interactions with the 2px orbital, making it larger than a typical p orbital.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is an occupied bonding pi orbital, and is contributed to by the 2py orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st Molecular Orbital of Carbon Monoxide. It shows s orbital character. It is occupied, and it&#039;s very deep in energy, therefore it cannot take part in bonding. It is almost solely contributed to by the 1s orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== 4th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO(4)Stuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 4th Molecular Orbital of Carbon Monoxide. It shows mainly s character. It is an occupied bonding orbital, and is mainly contributed to by the 2s orbital of Carbon and the 2s orbital of Oxygen, however there is a significant amount of contribution from the 2px orbitals of both Carbon and Oxygen too.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755814</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755814"/>
		<updated>2019-03-15T12:06:29Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.5241287 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5241287 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0557907 au&lt;br /&gt;
                           = -146.4784829 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;All values are to 7 dp&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, so energy is released. Therefore, the Ammonia gas is ~146.5 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: There is no bond angle because it is a diatomic molecule.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly p orbital character. It is an occupied antibonding orbital with sigma* interactions, mainly contributed to by the 2pz orbitals from both Carbon and Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an unoccupied antibonding pi* orbital, and is mainly contributed to by the 2px orbital from Carbon and the 2px orbital from Oxygen, both of which are out of phase. The 2px orbital from Oxygen is very bloated, which could be due to s interactions with the 2px orbital, making it larger than a typical p orbital.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is an occupied bonding pi orbital, and is contributed to by the 2py orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st Molecular Orbital of Carbon Monoxide. It shows s orbital character. It is occupied, and it&#039;s very deep in energy, therefore it cannot take part in bonding. It is almost solely contributed to by the 1s orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== 4th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO(4)Stuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 4th Molecular Orbital of Carbon Monoxide. It shows mainly s character. It is an occupied bonding orbital, and is mainly contributed to by the 2s orbital of Carbon and the 2s orbital of Oxygen, however there is a significant amount of contribution from the 2px orbitals of both Carbon and Oxygen too.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755689</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755689"/>
		<updated>2019-03-15T11:29:13Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* Energies */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;All values are to 7 dp&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, so energy is released. Therefore, the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly p orbital character. It is an occupied antibonding orbital with sigma* interactions, mainly contributed to by the 2pz orbitals from both Carbon and Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an unoccupied antibonding pi* orbital, and is mainly contributed to by the 2px orbital from Carbon and the 2px orbital from Oxygen, both of which are out of phase. The 2px orbital from Oxygen is very bloated, which could be due to s interactions with the 2px orbital, making it larger than a typical p orbital.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is an occupied bonding pi orbital, and is contributed to by the 2py orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st Molecular Orbital of Carbon Monoxide. It shows s orbital character. It is occupied, and it&#039;s very deep in energy, therefore it cannot take part in bonding. It is almost solely contributed to by the 1s orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== 4th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO(4)Stuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 4th Molecular Orbital of Carbon Monoxide. It shows mainly s character. It is an occupied bonding orbital, and is mainly contributed to by the 2s orbital of Carbon and the 2s orbital of Oxygen, however there is a significant amount of contribution from the 2px orbitals of both Carbon and Oxygen too.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755677</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755677"/>
		<updated>2019-03-15T11:25:55Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* LUMO */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly p orbital character. It is an occupied antibonding orbital with sigma* interactions, mainly contributed to by the 2pz orbitals from both Carbon and Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an unoccupied antibonding pi* orbital, and is mainly contributed to by the 2px orbital from Carbon and the 2px orbital from Oxygen, both of which are out of phase. The 2px orbital from Oxygen is very bloated, which could be due to s interactions with the 2px orbital, making it larger than a typical p orbital.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is an occupied bonding pi orbital, and is contributed to by the 2py orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st Molecular Orbital of Carbon Monoxide. It shows s orbital character. It is occupied, and it&#039;s very deep in energy, therefore it cannot take part in bonding. It is almost solely contributed to by the 1s orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== 4th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO(4)Stuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 4th Molecular Orbital of Carbon Monoxide. It shows mainly s character. It is an occupied bonding orbital, and is mainly contributed to by the 2s orbital of Carbon and the 2s orbital of Oxygen, however there is a significant amount of contribution from the 2px orbitals of both Carbon and Oxygen too.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755676</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755676"/>
		<updated>2019-03-15T11:25:35Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* LUMO */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly p orbital character. It is an occupied antibonding orbital with sigma* interactions, mainly contributed to by the 2pz orbitals from both Carbon and Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an unoccupied antibonding orbital, and is mainly contributed to by the 2px orbital from Carbon and the 2px orbital from Oxygen, both of which are out of phase. The 2px orbital from Oxygen is very bloated, which could be due to s interactions with the 2px orbital, making it larger than a typical p orbital.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is an occupied bonding pi orbital, and is contributed to by the 2py orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st Molecular Orbital of Carbon Monoxide. It shows s orbital character. It is occupied, and it&#039;s very deep in energy, therefore it cannot take part in bonding. It is almost solely contributed to by the 1s orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== 4th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO(4)Stuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 4th Molecular Orbital of Carbon Monoxide. It shows mainly s character. It is an occupied bonding orbital, and is mainly contributed to by the 2s orbital of Carbon and the 2s orbital of Oxygen, however there is a significant amount of contribution from the 2px orbitals of both Carbon and Oxygen too.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755670</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755670"/>
		<updated>2019-03-15T11:24:17Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* 4th MO */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly p orbital character. It is an occupied antibonding orbital with sigma* interactions, mainly contributed to by the 2pz orbitals from both Carbon and Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an unoccupied antibonding pi* orbital, and is mainly contributed to by the 2px orbital from Carbon and the 2px orbital from Oxygen, both of which are out of phase. The 2px orbital from Oxygen is very bloated, which could be due to s interactions with the 2px orbital, making it larger than a typical p orbital.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is an occupied bonding pi orbital, and is contributed to by the 2py orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st Molecular Orbital of Carbon Monoxide. It shows s orbital character. It is occupied, and it&#039;s very deep in energy, therefore it cannot take part in bonding. It is almost solely contributed to by the 1s orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== 4th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO(4)Stuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 4th Molecular Orbital of Carbon Monoxide. It shows mainly s character. It is an occupied bonding orbital, and is mainly contributed to by the 2s orbital of Carbon and the 2s orbital of Oxygen, however there is a significant amount of contribution from the 2px orbitals of both Carbon and Oxygen too.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755620</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755620"/>
		<updated>2019-03-15T11:17:21Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* 4th MO */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly p orbital character. It is an occupied antibonding orbital with sigma* interactions, mainly contributed to by the 2pz orbitals from both Carbon and Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an unoccupied antibonding pi* orbital, and is mainly contributed to by the 2px orbital from Carbon and the 2px orbital from Oxygen, both of which are out of phase. The 2px orbital from Oxygen is very bloated, which could be due to s interactions with the 2px orbital, making it larger than a typical p orbital.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is an occupied bonding pi orbital, and is contributed to by the 2py orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st Molecular Orbital of Carbon Monoxide. It shows s orbital character. It is occupied, and it&#039;s very deep in energy, therefore it cannot take part in bonding. It is almost solely contributed to by the 1s orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== 4th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO(4)Stuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 4th Molecular Orbital of Carbon Monoxide. It shows mainly s character. It is occupied, and is mainly contributed to by the 2s orbital of Carbon and the 2s orbital of Oxygen, however there is a significant amount of contribution from the 2px orbitals of both Carbon and Oxygen too.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755616</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755616"/>
		<updated>2019-03-15T11:17:03Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* Molecular Orbital Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly p orbital character. It is an occupied antibonding orbital with sigma* interactions, mainly contributed to by the 2pz orbitals from both Carbon and Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an unoccupied antibonding pi* orbital, and is mainly contributed to by the 2px orbital from Carbon and the 2px orbital from Oxygen, both of which are out of phase. The 2px orbital from Oxygen is very bloated, which could be due to s interactions with the 2px orbital, making it larger than a typical p orbital.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is an occupied bonding pi orbital, and is contributed to by the 2py orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st Molecular Orbital of Carbon Monoxide. It shows s orbital character. It is occupied, and it&#039;s very deep in energy, therefore it cannot take part in bonding. It is almost solely contributed to by the 1s orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== 4th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO(4)Stuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the 4th Molecular Orbital of Carbon Monoxide. It shows mainly s character. It is occupied, and is mainly contributed to by the 2s orbital of Carbon and the 2s orbital of Oxygen, however there is a significant amount of contribution from the 2px orbitals of both Carbon and Oxygen too.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755604</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755604"/>
		<updated>2019-03-15T11:15:00Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* Molecular Orbital Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly p orbital character. It is an antibonding orbital with sigma* interactions, mainly contributed to by the 2pz orbitals from both Carbon and Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an antibonding pi* orbital, and is mainly contributed to by the 2px orbital from Carbon and the 2px orbital from Oxygen, both of which are out of phase. The 2px orbital from Oxygen is very bloated, which could be due to s interactions with the 2px orbital, making it larger than a typical p orbital.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is a bonding pi orbital, and is contributed to by the 2py orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st Molecular Orbital of Carbon Monoxide. It shows s orbital character. It&#039;s very deep in energy, therefore it cannot take part in bonding. It is almost solely contributed to by the 1s orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== 4th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO(4)Stuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the 4th Molecular Orbital of Carbon Monoxide. It shows mainly s character. It is mainly contributed to by the 2s orbital of Carbon and the 2s orbital of Oxygen, however there is a significant amount of contribution from the 2px orbitals of both Carbon and Oxygen too.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=File:CO(4)Stuff.PNG&amp;diff=755594</id>
		<title>File:CO(4)Stuff.PNG</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=File:CO(4)Stuff.PNG&amp;diff=755594"/>
		<updated>2019-03-15T11:12:27Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755561</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755561"/>
		<updated>2019-03-15T10:59:47Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* Molecular Orbital Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly s and p orbital character. It is an antibonding orbital with sigma* interactions, mainly contributed to by the 2s orbital from Carbon and the 2p orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an antibonding pi* orbital, and is mainly contributed to by the 2p orbital from Carbon and the 2p orbital from Oxygen, both of which are out of phase.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is a bonding pi orbital, and is contributed to by the 2p orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755559</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755559"/>
		<updated>2019-03-15T10:59:23Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* Molecular Orbital Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly s and p orbital character. It is an antibonding orbital with sigma* interactions, mainly contributed to by the 2s orbital from Carbon and the 2p orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|300px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an antibonding pi* orbital, and is mainly contributed to by the 2p orbital from Carbon and the 2p orbital from Oxygen, both of which are out of phase.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is a bonding pi orbital, and is contributed to by the 2p orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755557</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755557"/>
		<updated>2019-03-15T10:59:08Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* Molecular Orbital Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly s and p orbital character. It is an antibonding orbital with sigma* interactions, mainly contributed to by the 2s orbital from Carbon and the 2p orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG|150px]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an antibonding pi* orbital, and is mainly contributed to by the 2p orbital from Carbon and the 2p orbital from Oxygen, both of which are out of phase.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is a bonding pi orbital, and is contributed to by the 2p orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755552</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755552"/>
		<updated>2019-03-15T10:57:24Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows mainly s and p orbital character. It is an antibonding orbital with sigma* interactions, mainly contributed to by the 2s orbital from Carbon and the 2p orbital from Oxygen.&lt;br /&gt;
&lt;br /&gt;
==== LUMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COLUMOStuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the LUMO of Carbon Monoxide. It shows mainly p orbital character. It is an antibonding pi* orbital, and is mainly contributed to by the 2p orbital from Carbon and the 2p orbital from Oxygen, both of which are out of phase.&lt;br /&gt;
&lt;br /&gt;
==== 6th MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO2pBondingStuff(6).PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the 6th Molecular Orbital in Carbon Monoxide. It shows p orbital character. It is a bonding pi orbital, and is contributed to by the 2p orbitals from both Carbon and Oxygen, both of which are in phase.&lt;br /&gt;
&lt;br /&gt;
==== 1st MO ====&lt;br /&gt;
&lt;br /&gt;
[[File:CO1sBondingStuff(1).PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the 1st&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=File:CO1sBondingStuff(1).PNG&amp;diff=755544</id>
		<title>File:CO1sBondingStuff(1).PNG</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=File:CO1sBondingStuff(1).PNG&amp;diff=755544"/>
		<updated>2019-03-15T10:56:31Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=File:CO2pBondingStuff(6).PNG&amp;diff=755520</id>
		<title>File:CO2pBondingStuff(6).PNG</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=File:CO2pBondingStuff(6).PNG&amp;diff=755520"/>
		<updated>2019-03-15T10:51:10Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=File:COLUMOStuff.PNG&amp;diff=755427</id>
		<title>File:COLUMOStuff.PNG</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=File:COLUMOStuff.PNG&amp;diff=755427"/>
		<updated>2019-03-15T10:34:13Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755424</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755424"/>
		<updated>2019-03-15T10:33:26Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* Molecular Orbital Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows 99.99% s orbital character and a small amount of d orbital character (0.01%). It is an antibonding orbital with sigma interactions, mainly contributed to by the 2s orbital from Carbon and the 2p orbital from Oxygen.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755385</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755385"/>
		<updated>2019-03-15T10:21:57Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* == Molecule Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows 99.99% s orbital character and a small amount of d orbital character (0.01%). It is a sigma orbital formed from the 2px orbitals from both Carbon and Oxygen.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755383</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755383"/>
		<updated>2019-03-15T10:21:43Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* Molecule Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ==&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows 99.99% s orbital character and a small amount of d orbital character (0.01%). It is a sigma orbital formed from the 2px orbitals from both Carbon and Oxygen.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755380</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755380"/>
		<updated>2019-03-15T10:21:26Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* Molecule Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows 99.99% s orbital character and a small amount of d orbital character (0.01%). It is a sigma orbital formed from the 2px orbitals from both Carbon and Oxygen.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755379</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755379"/>
		<updated>2019-03-15T10:21:10Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* Molecule Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows 99.99% s orbital character and a small amount of d orbital character (0.01%). It is a sigma orbital formed from the 2px orbitals from both Carbon and Oxygen.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755376</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755376"/>
		<updated>2019-03-15T10:20:47Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* Molecule Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==== Molecule Information ====&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows 99.99% s orbital character and a small amount of d orbital character (0.01%). It is a sigma orbital formed from the 2px orbitals from both Carbon and Oxygen.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755373</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755373"/>
		<updated>2019-03-15T10:20:19Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;br /&gt;
&lt;br /&gt;
==== HOMO ====&lt;br /&gt;
&lt;br /&gt;
[[File:COHOMOStuff.PNG]]&lt;br /&gt;
&lt;br /&gt;
This is the HOMO of Carbon Monoxide. It shows 99.99% s orbital character and a small amount of d orbital character (0.01%). It is a sigma orbital formed from the 2px orbitals from both Carbon and Oxygen.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=File:COHOMOStuff.PNG&amp;diff=755322</id>
		<title>File:COHOMOStuff.PNG</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=File:COHOMOStuff.PNG&amp;diff=755322"/>
		<updated>2019-03-15T10:07:36Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755313</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755313"/>
		<updated>2019-03-15T10:06:00Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;br /&gt;
&lt;br /&gt;
=== Molecular Orbital Information ===&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755249</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755249"/>
		<updated>2019-03-15T09:53:48Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
The H-H bond in the metal complex is longer due to the Rhenium bonded to one of the Hydrogens in the H-H bond. The Re-H bond withdraws electron density from the H-H bond, weakening the bond. The weakening of the bond causes the bond to elongate.&lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755107</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=755107"/>
		<updated>2019-03-15T09:08:56Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Nitrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on each Hydrogen: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The H-H bond in the metal complex is longer because&#039;&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is 147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANCOOPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
Expected charge on Carbon: 0 &amp;lt; Q1 &amp;lt; +1&lt;br /&gt;
&lt;br /&gt;
Expected charge on Oxygen: -Q1 ( -1 &amp;lt; Q2 &amp;lt; 0)&lt;br /&gt;
&lt;br /&gt;
Expected charge across entire molecule: 0&lt;br /&gt;
&lt;br /&gt;
Oxygen has a higher electronegativity than carbon, so electrons within the C-O triple bond will be withdrawn by the oxygen, causing the Carbon to be slightly positively charged, and the Oxygen to become slightly negatively charged.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754300</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754300"/>
		<updated>2019-03-14T12:12:53Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Ammonia: 0&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
N2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Nitrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on N2: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
H2 has a single band and is IR inactive.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each Hydrogen atom: 0&lt;br /&gt;
&lt;br /&gt;
Overall Charge on H2: 0&lt;br /&gt;
&lt;br /&gt;
The two atoms in H2 are the same; both are Hydrogen. Because of this, they have equal electronegativities and the bond will not be polar. &lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The H-H bond in the metal complex is longer because&#039;&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is -147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
CO has a single band and is IR active.&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on Carbon: +0.506&lt;br /&gt;
&lt;br /&gt;
Charge on Oxygen: -0.506&lt;br /&gt;
&lt;br /&gt;
Overall Charge on Carbon Monoxide: 0&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The two atoms in N2 are the same; both are Nitrogen. Because of this, they have equal electronegativities and the bond will not be polar.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754226</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754226"/>
		<updated>2019-03-14T11:49:24Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The H-H bond in the metal complex is longer because&#039;&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is -147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2210 || SG || 70&lt;br /&gt;
|}&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754220</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754220"/>
		<updated>2019-03-14T11:47:26Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The H-H bond in the metal complex is longer because&#039;&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is -147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansCOVibrationsNotYours.PNG]]&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=File:RumansCOVibrationsNotYours.PNG&amp;diff=754213</id>
		<title>File:RumansCOVibrationsNotYours.PNG</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=File:RumansCOVibrationsNotYours.PNG&amp;diff=754213"/>
		<updated>2019-03-14T11:46:35Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754204</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754204"/>
		<updated>2019-03-14T11:44:37Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* CO */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The H-H bond in the metal complex is longer because&#039;&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is -147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754195</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754195"/>
		<updated>2019-03-14T11:42:05Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The H-H bond in the metal complex is longer because&#039;&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is -147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000182     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000182     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000101     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.301714D-08&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=File:RUMANCOOPTIMISEPOP.LOG&amp;diff=754183</id>
		<title>File:RUMANCOOPTIMISEPOP.LOG</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=File:RUMANCOOPTIMISEPOP.LOG&amp;diff=754183"/>
		<updated>2019-03-14T11:39:14Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: Mra1018 uploaded a new version of File:RUMANCOOPTIMISEPOP.LOG&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754176</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754176"/>
		<updated>2019-03-14T11:38:05Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* CO */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The H-H bond in the metal complex is longer because&#039;&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is -147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.13786 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754143</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754143"/>
		<updated>2019-03-14T11:31:30Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published this is the link]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The H-H bond in the metal complex is longer because&#039;&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is -147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754112</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754112"/>
		<updated>2019-03-14T11:25:30Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [[https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published]]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The H-H bond in the metal complex is longer because&#039;&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is -147.8 KJ/mol more stable than the reactants.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= CO =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Carbon Monoxide&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANCOOPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Carbon Monoxide&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -113.30945313 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C*v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=File:RUMANCOOPTIMISEPOP.LOG&amp;diff=754099</id>
		<title>File:RUMANCOOPTIMISEPOP.LOG</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=File:RUMANCOOPTIMISEPOP.LOG&amp;diff=754099"/>
		<updated>2019-03-14T11:21:35Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754010</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=754010"/>
		<updated>2019-03-14T10:54:55Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [[https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published]]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The H-H bond in the metal complex is longer because&#039;&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is -147.8 KJ/mol more stable than the reactants.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753969</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753969"/>
		<updated>2019-03-14T10:46:00Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [[https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published]]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The H-H bond in the metal complex is longer because&#039;&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181 au&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283 au&lt;br /&gt;
                           = -147.8900042 KJ/mol (au value multiplied by 2625.5)&lt;br /&gt;
&lt;br /&gt;
The value for ΔE is highly negative, indicating that the reaction is highly exothermic, therefore the Ammonia gas is -147.8 KJ/mol more stable than the reactants.&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753953</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753953"/>
		<updated>2019-03-14T10:42:37Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [[https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published]]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is 0.16521 A longer.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The H-H bond in the metal complex is longer because&#039;&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
=== Energies ===&lt;br /&gt;
&lt;br /&gt;
====== All to 7 dp ======&lt;br /&gt;
&lt;br /&gt;
E(NH3)= -56.5577687 au&lt;br /&gt;
&lt;br /&gt;
2*E(NH3)= -113.1155375&lt;br /&gt;
&lt;br /&gt;
E(N2)= -109.5235911 au&lt;br /&gt;
&lt;br /&gt;
E(H2)= -1.1785394 au&lt;br /&gt;
&lt;br /&gt;
3*E(H2)= -3.5356181&lt;br /&gt;
&lt;br /&gt;
ΔE=2*E(NH3)-[E(N2)+3*E(H2)]= -0.0563283&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753911</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753911"/>
		<updated>2019-03-14T10:32:40Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* ConQuest/CCDC */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
Link to complex: [[https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published]]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;br /&gt;
&lt;br /&gt;
Difference in bond lengths: H-H bond in complex is&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753903</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753903"/>
		<updated>2019-03-14T10:31:01Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: /* ConQuest/CCDC */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
[[https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published]]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753892</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753892"/>
		<updated>2019-03-14T10:27:21Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=== ConQuest/CCDC ===&lt;br /&gt;
&lt;br /&gt;
Unique Identifier for complex: GIKGOW01&lt;br /&gt;
&lt;br /&gt;
[[https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=GIKGOW01&amp;amp;DatabaseToSearch=Published| Link to complex]]&lt;br /&gt;
&lt;br /&gt;
H-H bond in complex: 0.9080 A&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753778</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753778"/>
		<updated>2019-03-14T09:57:31Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.09200 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length: 0.74279 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 180 +- 1*&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
	<entry>
		<id>https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753732</id>
		<title>Rep:Mod:RumanAhmedsNH3Stuff</title>
		<link rel="alternate" type="text/html" href="https://chemwiki.ch.ic.ac.uk/index.php?title=Rep:Mod:RumanAhmedsNH3Stuff&amp;diff=753732"/>
		<updated>2019-03-14T09:45:34Z</updated>

		<summary type="html">&lt;p&gt;Mra1018: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
= NH3 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Ammonia&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMAN AHMED NH3 OPTIMISE POP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Ammonia&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -56.55776873 au&lt;br /&gt;
&lt;br /&gt;
Point Group: C3v&lt;br /&gt;
&lt;br /&gt;
Bond Length: 1.01798 +- 0.01A&lt;br /&gt;
&lt;br /&gt;
Bond Angle: 105.741 +- 1°&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMAN AHMED NH3 OPTIMISE POP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000004     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000004     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000072     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000035     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-5.986274D-10&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansDisplayVibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) &lt;br /&gt;
|-&lt;br /&gt;
|   1090 || A1 || 145&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   1694 || E || 14&lt;br /&gt;
|-&lt;br /&gt;
|   3461 || A1 || 1&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|-&lt;br /&gt;
|   3590 || E || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==== Questions on Vibrations ====&lt;br /&gt;
&lt;br /&gt;
1) Modes expected from 3N-6 rule: 3*4-6=6&lt;br /&gt;
&lt;br /&gt;
2) Degenerate Modes: Modes with wavenumbers 1694cm-1 and modes with wavenumbers 3590cm-1&lt;br /&gt;
&lt;br /&gt;
3) Bending Vibrations: 1090cm-1 and 1694cm-1   Bond Stretches: 3461cm-1 and 3590cm-1&lt;br /&gt;
&lt;br /&gt;
4) Highly Symmetric Mode: 3590cm-1 / 1090cm-1&lt;br /&gt;
&lt;br /&gt;
5) Umbrella Mode: 1090cm-1&lt;br /&gt;
&lt;br /&gt;
6) 2 bands&lt;br /&gt;
&lt;br /&gt;
=== Charge Analysis ===&lt;br /&gt;
&lt;br /&gt;
Charge on each H: +0.375&lt;br /&gt;
&lt;br /&gt;
Charge on N: -1.125&lt;br /&gt;
&lt;br /&gt;
The expected charge values for each Hydrogen would be &#039;&#039;&#039;above 0 and below +1&#039;&#039;&#039;, and &#039;&#039;each Hydrogen would have the same charge value&#039;&#039;. The expected charge value on the Nitrogen would be &#039;&#039;&#039;-3 multiplied by the charge value of 1 Hydrogen, below 0 and above -3.&#039;&#039;&#039; This is because the N-H bond is polar, due to the Nitrogen being highly electronegative when compared to Hydrogen, so electron density in the N-H bond is withdrawn by the Nitrogen. Because the electron density isn&#039;t fully withdrawn, the charge values on each Hydrogen would be greater than 0, but less than 1. And the charge value of the Nitrogen would be -3 multiplied by the charge on a single Hydrogen atom in the molecule.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= N2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Nitrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDN2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Nitrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -109.52359111 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length:&lt;br /&gt;
&lt;br /&gt;
Bond Angle: &lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDN2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000001     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000001     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000000     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-3.401012D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansN2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  2457 || SSG || 0&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
= H2 =&lt;br /&gt;
&lt;br /&gt;
=== Molecule ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;jmol&amp;gt;&amp;lt;jmolApplet&amp;gt;&lt;br /&gt;
  &amp;lt;title&amp;gt;Optimised Hydrogen&amp;lt;/title&amp;gt;&lt;br /&gt;
  &amp;lt;color&amp;gt;black&amp;lt;/color&amp;gt;&lt;br /&gt;
  &amp;lt;size&amp;gt;200&amp;lt;/size&amp;gt;&lt;br /&gt;
  &amp;lt;uploadedFileContents&amp;gt;RUMANAHMEDH2OPTIMISEPOP.LOG&amp;lt;/uploadedFileContents&amp;gt;&lt;br /&gt;
&amp;lt;/jmolApplet&amp;gt;&amp;lt;/jmol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Molecule Information ===&lt;br /&gt;
&lt;br /&gt;
Molecule Name: Hydrogen&lt;br /&gt;
&lt;br /&gt;
Calculation Method: RB3LYP&lt;br /&gt;
&lt;br /&gt;
Basis Set: 6-31G(d.p)&lt;br /&gt;
&lt;br /&gt;
Final Energy: E(RB3LYP) = -1.17853936 au&lt;br /&gt;
&lt;br /&gt;
Point Group: DinfH&lt;br /&gt;
&lt;br /&gt;
Bond Length:&lt;br /&gt;
&lt;br /&gt;
Bond Angle:&lt;br /&gt;
&lt;br /&gt;
The optimisation file can be accessed by clicking [[Media:RUMANAHMEDH2OPTIMISEPOP.LOG| here]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
         Item               Value     Threshold  Converged?&lt;br /&gt;
 Maximum Force            0.000000     0.000450     YES&lt;br /&gt;
 RMS     Force            0.000000     0.000300     YES&lt;br /&gt;
 Maximum Displacement     0.000000     0.001800     YES&lt;br /&gt;
 RMS     Displacement     0.000001     0.001200     YES&lt;br /&gt;
 Predicted change in Energy=-1.164080D-13&lt;br /&gt;
 Optimization completed.&lt;br /&gt;
    -- Stationary point found.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Vibrations ===&lt;br /&gt;
&lt;br /&gt;
[[File:RumansH2VibrationsNotYours.PNG]]&lt;br /&gt;
&lt;br /&gt;
{| class=&amp;quot;wikitable&amp;quot; border=&amp;quot;3&amp;quot;&lt;br /&gt;
! Wavenumber !! Symmetry !! Intensity (au) !&lt;br /&gt;
|-&lt;br /&gt;
|  4466 || SSG || 0&lt;br /&gt;
|}&lt;/div&gt;</summary>
		<author><name>Mra1018</name></author>
	</entry>
</feed>