https://chemwiki.ch.ic.ac.uk/api.php?action=feedcontributions&feedformat=atom&user=Es4215 2026-05-16T14:24:55Z User contributions MediaWiki 1.43.0 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=732088 2018-05-25T14:19:05Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> &lt;jmol&gt;&lt;jmolApplet&gt;<br /> &lt;title&gt;BH3&lt;/title&gt;<br /> &lt;color&gt;black&lt;/color&gt;<br /> &lt;size&gt;200&lt;/size&gt;<br /> &lt;uploadedFileContents&gt;ES BH3 NEWSYM OPT.LOG&lt;/uploadedFileContents&gt;<br /> &lt;script&gt;frame 1.4&lt;/script&gt;<br /> &lt;/jmolApplet&gt;&lt;/jmol&gt;<br /> <br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> [[File:ES_isomers.PNG|thumb|right|The isomers of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;.]]<br /> <br /> Isomer with both Br atoms at the same terminus. Projected point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Projected point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Projected point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Projected point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Projected point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.438 Å. All bonds in the Al-Br-Al-Br bridging system were of equal length.<br /> <br /> Al-Br-Al bridging bond angle: 87.997&lt;sup&gt;o&lt;/sup&gt;<br /> <br /> Al-Cl bond length: 2.099 Å<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.53761798 a.u.<br /> <br /> RMS Gradient Norm = 0.00000456 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 13 minutes 44.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.228 Å<br /> <br /> Al-Cl bond length (bridging): 2.2975 Å and 2.2976 Å. Opposing sides of the Cl-Al-Cl-Al bridging system were equal in length. The two different Al-Cl bond lengths reduced the symmetry to C&lt;sub&gt;1&lt;/sub&gt; instead of the expected C&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Al-Cl bond length (terminal): 2.097 Å<br /> <br /> Al-Cl-Al bridging bond angle: 89.271&lt;sup&gt;o&lt;/sup&gt;. A larger angle than the Al-Br-Al bridging angle.<br /> <br /> Full log file for this computation can be found [[Media:ES TRANSISOMER OPT.LOG|here]]<br /> <br /> The energy calculated for this isomer is -7469.537618 a.u., in comparison to the bridging isomer, whose energy is -7469.542691 a.u.. Therefore the bridging isomer is lower in energy by 0.005073 a.u., which corresponds to an interconversion energy of ±13.3 kJ/mol.<br /> <br /> The molecule is more stable with Br as the bridging atoms. A plausible explanation is that Br is a larger atom than Cl, and therefore the four-atom bridging system is less strained. This is supported by several pieces of evidence from the Gaussian calculations. Firstly, there are two different Al-Cl bridging bond lengths in the trans isomer, suggesting a more strained system. In comparison, the Al-Br bonds in the bridging isomer are all equal. Al-Cl bridging bonds are also shorter than Al-Br bridging bonds, and the Al-Cl-Al bridging angle is larger than the Al-Br-Al angle. All of these indicate that Al-Cl-Al-Cl bridging system is more strained than the Al-Br-Al-Br bridging system.<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy and therefore the more stable of the two isomers. Therefore, since the isomers are able to interconvert around the Al atoms, the bridging isomer will be preferred. It can be formed by dimerisation of AlCl&lt;sub&gt;2&lt;/sub&gt;Br, which is both Lewis acidic (as it is electron deficient around the Al atom) and has Lewis base character (due to lone pairs of electrons on the halogens). In order to calculate the association energy of this process, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -3734.74851982 a.u.<br /> <br /> RMS Gradient Norm = 0.00001669 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.6912 Debye<br /> <br /> Point Group = C2V<br /> <br /> Job cpu time:       0 days  0 hours  8 minutes 44.0 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file for this optimisation can be found [[Media:ES MONOMER OPT.LOG|here]]<br /> <br /> Energy of the Br-bridging dimer: -7469.542618 a.u.<br /> <br /> Energy of AlCl&lt;sub&gt;2&lt;/sub&gt;Br: -3734.748520 a.u.<br /> <br /> Energy change at association: -0.045778 a.u.=-119.7 kJ/mol <br /> <br /> ===Molecular orbitals of the bridging isomer===<br /> <br /> &lt;jmol&gt;&lt;jmolApplet&gt;<br /> &lt;title&gt;bridging Al2Cl4Br2&lt;/title&gt;<br /> &lt;color&gt;black&lt;/color&gt;<br /> &lt;size&gt;200&lt;/size&gt;<br /> &lt;uploadedFileContents&gt;ES BRIDGINGISOMER OPT.LOG&lt;/uploadedFileContents&gt;<br /> &lt;script&gt;frame 1.26&lt;/script&gt;<br /> &lt;/jmolApplet&gt;&lt;/jmol&gt;<br /> <br /> To calculate the molecular orbitals of the bridging isomer, a frequency analysis of the bridging isomer was carried out.<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269097 a.u.<br /> <br /> RMS Gradient Norm = 0.00004063 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  2 minutes 31.0 seconds.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000097 0.000450 YES<br /> RMS Force 0.000041 0.000300 YES<br /> Maximum Displacement 0.001672 0.001800 YES<br /> RMS Displacement 0.000687 0.001200 YES<br /> Predicted change in Energy=-1.760083D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> Full log file of the frequency computation can be found [[Media:ES BRIDGINGISOMER FREQ.LOG|here]]<br /> <br /> {| class=&quot;wikitable&quot; border=&quot;1&quot;<br /> |+ Selected molecular orbitals of the bridging isomer of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;<br /> ! MO number !! Visualised MO!!Diagram of constituent atomic orbitals!!Description<br /> |-<br /> | 72 || [[File:ES_bonding.PNG|150px]] || [[File:ES_LCAO72.PNG|150px]] || This orbital is composed of p&lt;sub&gt;z&lt;/sub&gt; orbitals, all locally in phase and thus able to interact in a bonding fashion. There is a large area of electron density between the Al atoms and the bridging Br atoms, indicating a σ-style overlap and thus a strong bonding interaction. There are bonding interactions through-bond between the Al atoms and the terminal Cl atoms, but these are π-style and thus weaker. Through-space bonding interactions between the terminal Cl atoms are possible, but very weak because of the distance being larger and the interactions being π-type. Since Al is less electronegative than either Cl and Br, the Al contribution to this bonding orbital is smaller. Overall: a highly bonding orbital.<br /> |-<br /> | 79 || [[File:ES_MO79.PNG|150px]] || [[File:ES_LCAO79.PNG|150px]] || This orbital is also composed of p-orbitals. The p-orbitals on the Cl atoms at the same terminus are in phase, with a very weak π-type through-space bonding interaction. Between Cl atoms on opposite termini, there are extremely weak π-type through-space antibonding interactions. The p-orbitals on the bridging Br atoms are oriented orthogonally to those on the Cl atoms. Since they are oriented closer to the opposite-phase lobe of the p-orbital on the Cl atoms, the antibonding interactions will be slightly stronger. There are also weak π-type antibonding interactions between the p-orbitals on the Br atoms. The Al atoms do not contribute to this MO. Overall: non-bonding, maybe slightly antibonding.<br /> |-<br /> | 81 || [[File:ES_antibonding.PNG|150px]] || [[File:ES_LCAO81.PNG|150px]] || This orbital is also composed of p-orbitals. There are weak π-type through-space antibonding interactions between orbitals on Cl atoms at the same terminus, and between the orbitals on the bridging Br atoms. Stronger σ-type through-space antibonding interactions occur between orbitals on the bridging Br atoms and terminal Cl atoms. There are very weak π-type through-space interactions between orbitals on Cl atoms at opposite termini. As with Molecular Orbital 79, the Al atoms do not contribute to this MO. Overall: highly antibonding.<br /> |}</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=732069 2018-05-25T14:16:31Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> &lt;jmol&gt;&lt;jmolApplet&gt;<br /> &lt;title&gt;BH3&lt;/title&gt;<br /> &lt;color&gt;black&lt;/color&gt;<br /> &lt;size&gt;200&lt;/size&gt;<br /> &lt;uploadedFileContents&gt;ES BH3 NEWSYM OPT.LOG&lt;/uploadedFileContents&gt;<br /> &lt;script&gt;frame 1.4&lt;/script&gt;<br /> &lt;/jmolApplet&gt;&lt;/jmol&gt;<br /> <br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> [[File:ES_isomers.PNG|thumb|right|The isomers of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;.]]<br /> <br /> Isomer with both Br atoms at the same terminus. Projected point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Projected point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Projected point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Projected point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Projected point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.438 Å. All bonds in the Al-Br-Al-Br bridging system were of equal length.<br /> <br /> Al-Br-Al bridging bond angle: 87.997&lt;sup&gt;o&lt;/sup&gt;<br /> <br /> Al-Cl bond length: 2.099 Å<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.53761798 a.u.<br /> <br /> RMS Gradient Norm = 0.00000456 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 13 minutes 44.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.228 Å<br /> <br /> Al-Cl bond length (bridging): 2.2975 Å and 2.2976 Å. Opposing sides of the Cl-Al-Cl-Al bridging system were equal in length. The two different Al-Cl bond lengths reduced the symmetry to C&lt;sub&gt;1&lt;/sub&gt; instead of the expected C&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Al-Cl bond length (terminal): 2.097 Å<br /> <br /> Al-Cl-Al bridging bond angle: 89.271&lt;sup&gt;o&lt;/sup&gt;. A larger angle than the Al-Br-Al bridging angle.<br /> <br /> Full log file for this computation can be found [[Media:ES TRANSISOMER OPT.LOG|here]]<br /> <br /> The energy calculated for this isomer is -7469.537618 a.u., in comparison to the bridging isomer, whose energy is -7469.542691 a.u.. Therefore the bridging isomer is lower in energy by 0.005073 a.u., which corresponds to an interconversion energy of ±13.3 kJ/mol.<br /> <br /> The molecule is more stable with Br as the bridging atoms. A plausible explanation is that Br is a larger atom than Cl, and therefore the four-atom bridging system is less strained. This is supported by several pieces of evidence from the Gaussian calculations. Firstly, there are two different Al-Cl bridging bond lengths in the trans isomer, suggesting a more strained system. In comparison, the Al-Br bonds in the bridging isomer are all equal. Al-Cl bridging bonds are also shorter than Al-Br bridging bonds, and the Al-Cl-Al bridging angle is larger than the Al-Br-Al angle. All of these indicate that Al-Cl-Al-Cl bridging system is more strained than the Al-Br-Al-Br bridging system.<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy and therefore the more stable of the two isomers. Therefore, since the isomers are able to interconvert around the Al atoms, the bridging isomer will be preferred. It can be formed by dimerisation of AlCl&lt;sub&gt;2&lt;/sub&gt;Br, which is both Lewis acidic (as it is electron deficient around the Al atom) and has Lewis base character (due to lone pairs of electrons on the halogens). In order to calculate the association energy of this process, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -3734.74851982 a.u.<br /> <br /> RMS Gradient Norm = 0.00001669 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.6912 Debye<br /> <br /> Point Group = C2V<br /> <br /> Job cpu time:       0 days  0 hours  8 minutes 44.0 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file for this optimisation can be found [[Media:ES MONOMER OPT.LOG|here]]<br /> <br /> Energy of the Br-bridging dimer: -7469.542618 a.u.<br /> <br /> Energy of AlCl&lt;sub&gt;2&lt;/sub&gt;Br: -3734.748520 a.u.<br /> <br /> Energy change at association: -0.045778 a.u.=-119.7 kJ/mol <br /> <br /> ===Molecular orbitals of the bridging isomer===<br /> <br /> <br /> <br /> To calculate the molecular orbitals of the bridging isomer, a frequency analysis of the bridging isomer was carried out.<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269097 a.u.<br /> <br /> RMS Gradient Norm = 0.00004063 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  2 minutes 31.0 seconds.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000097 0.000450 YES<br /> RMS Force 0.000041 0.000300 YES<br /> Maximum Displacement 0.001672 0.001800 YES<br /> RMS Displacement 0.000687 0.001200 YES<br /> Predicted change in Energy=-1.760083D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> Full log file of the frequency computation can be found [[Media:ES BRIDGINGISOMER FREQ.LOG|here]]<br /> <br /> {| class=&quot;wikitable&quot; border=&quot;1&quot;<br /> |+ Selected molecular orbitals of the bridging isomer of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;<br /> ! MO number !! Visualised MO!!Diagram of constituent atomic orbitals!!Description<br /> |-<br /> | 72 || [[File:ES_bonding.PNG|150px]] || [[File:ES_LCAO72.PNG|150px]] || This orbital is composed of p&lt;sub&gt;z&lt;/sub&gt; orbitals, all locally in phase and thus able to interact in a bonding fashion. There is a large area of electron density between the Al atoms and the bridging Br atoms, indicating a σ-style overlap and thus a strong bonding interaction. There are bonding interactions through-bond between the Al atoms and the terminal Cl atoms, but these are π-style and thus weaker. Through-space bonding interactions between the terminal Cl atoms are possible, but very weak because of the distance being larger and the interactions being π-type. Since Al is less electronegative than either Cl and Br, the Al contribution to this bonding orbital is smaller. Overall: a highly bonding orbital.<br /> |-<br /> | 79 || [[File:ES_MO79.PNG|150px]] || [[File:ES_LCAO79.PNG|150px]] || This orbital is also composed of p-orbitals. The p-orbitals on the Cl atoms at the same terminus are in phase, with a very weak π-type through-space bonding interaction. Between Cl atoms on opposite termini, there are extremely weak π-type through-space antibonding interactions. The p-orbitals on the bridging Br atoms are oriented orthogonally to those on the Cl atoms. Since they are oriented closer to the opposite-phase lobe of the p-orbital on the Cl atoms, the antibonding interactions will be slightly stronger. There are also weak π-type antibonding interactions between the p-orbitals on the Br atoms. The Al atoms do not contribute to this MO. Overall: non-bonding, maybe slightly antibonding.<br /> |-<br /> | 81 || [[File:ES_antibonding.PNG|150px]] || [[File:ES_LCAO81.PNG|150px]] || This orbital is also composed of p-orbitals. There are weak π-type through-space antibonding interactions between orbitals on Cl atoms at the same terminus, and between the orbitals on the bridging Br atoms. Stronger σ-type through-space antibonding interactions occur between orbitals on the bridging Br atoms and terminal Cl atoms. There are very weak π-type through-space interactions between orbitals on Cl atoms at opposite termini. As with Molecular Orbital 79, the Al atoms do not contribute to this MO. Overall: highly antibonding.<br /> |}</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=732014 2018-05-25T14:09:10Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> &lt;jmol&gt;&lt;jmolApplet&gt;<br /> &lt;title&gt;BH3&lt;/title&gt;<br /> &lt;color&gt;black&lt;/color&gt;<br /> &lt;size&gt;200&lt;/size&gt;<br /> &lt;uploadedFileContents&gt;ES BH3 NEWSYM OPT.LOG&lt;/uploadedFileContents&gt;<br /> &lt;/jmolApplet&gt;&lt;/jmol&gt;<br /> <br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> [[File:ES_isomers.PNG|thumb|right|The isomers of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;.]]<br /> <br /> Isomer with both Br atoms at the same terminus. Projected point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Projected point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Projected point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Projected point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Projected point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.438 Å. All bonds in the Al-Br-Al-Br bridging system were of equal length.<br /> <br /> Al-Br-Al bridging bond angle: 87.997&lt;sup&gt;o&lt;/sup&gt;<br /> <br /> Al-Cl bond length: 2.099 Å<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.53761798 a.u.<br /> <br /> RMS Gradient Norm = 0.00000456 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 13 minutes 44.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.228 Å<br /> <br /> Al-Cl bond length (bridging): 2.2975 Å and 2.2976 Å. Opposing sides of the Cl-Al-Cl-Al bridging system were equal in length. The two different Al-Cl bond lengths reduced the symmetry to C&lt;sub&gt;1&lt;/sub&gt; instead of the expected C&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Al-Cl bond length (terminal): 2.097 Å<br /> <br /> Al-Cl-Al bridging bond angle: 89.271&lt;sup&gt;o&lt;/sup&gt;. A larger angle than the Al-Br-Al bridging angle.<br /> <br /> Full log file for this computation can be found [[Media:ES TRANSISOMER OPT.LOG|here]]<br /> <br /> The energy calculated for this isomer is -7469.537618 a.u., in comparison to the bridging isomer, whose energy is -7469.542691 a.u.. Therefore the bridging isomer is lower in energy by 0.005073 a.u., which corresponds to an interconversion energy of ±13.3 kJ/mol.<br /> <br /> The molecule is more stable with Br as the bridging atoms. A plausible explanation is that Br is a larger atom than Cl, and therefore the four-atom bridging system is less strained. This is supported by several pieces of evidence from the Gaussian calculations. Firstly, there are two different Al-Cl bridging bond lengths in the trans isomer, suggesting a more strained system. In comparison, the Al-Br bonds in the bridging isomer are all equal. Al-Cl bridging bonds are also shorter than Al-Br bridging bonds, and the Al-Cl-Al bridging angle is larger than the Al-Br-Al angle. All of these indicate that Al-Cl-Al-Cl bridging system is more strained than the Al-Br-Al-Br bridging system.<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy and therefore the more stable of the two isomers. Therefore, since the isomers are able to interconvert around the Al atoms, the bridging isomer will be preferred. It can be formed by dimerisation of AlCl&lt;sub&gt;2&lt;/sub&gt;Br, which is both Lewis acidic (as it is electron deficient around the Al atom) and has Lewis base character (due to lone pairs of electrons on the halogens). In order to calculate the association energy of this process, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -3734.74851982 a.u.<br /> <br /> RMS Gradient Norm = 0.00001669 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.6912 Debye<br /> <br /> Point Group = C2V<br /> <br /> Job cpu time:       0 days  0 hours  8 minutes 44.0 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file for this optimisation can be found [[Media:ES MONOMER OPT.LOG|here]]<br /> <br /> Energy of the Br-bridging dimer: -7469.542618 a.u.<br /> <br /> Energy of AlCl&lt;sub&gt;2&lt;/sub&gt;Br: -3734.748520 a.u.<br /> <br /> Energy change at association: -0.045778 a.u.=-119.7 kJ/mol <br /> <br /> ===Molecular orbitals of the bridging isomer===<br /> <br /> A frequency analysis of the bridging isomer was carried out.<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269097 a.u.<br /> <br /> RMS Gradient Norm = 0.00004063 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  2 minutes 31.0 seconds.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000097 0.000450 YES<br /> RMS Force 0.000041 0.000300 YES<br /> Maximum Displacement 0.001672 0.001800 YES<br /> RMS Displacement 0.000687 0.001200 YES<br /> Predicted change in Energy=-1.760083D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> Full log file of the frequency computation can be found [[Media:ES BRIDGINGISOMER FREQ.LOG|here]]<br /> <br /> {| class=&quot;wikitable&quot; border=&quot;1&quot;<br /> |+ Selected molecular orbitals of the bridging isomer of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;<br /> ! MO number !! Visualised MO!!Diagram of constituent atomic orbitals!!Description<br /> |-<br /> | 72 || [[File:ES_bonding.PNG|150px]] || [[File:ES_LCAO72.PNG|150px]] || This orbital is composed of p&lt;sub&gt;z&lt;/sub&gt; orbitals, all locally in phase and thus able to interact in a bonding fashion. There is a large area of electron density between the Al atoms and the bridging Br atoms, indicating a σ-style overlap and thus a strong bonding interaction. There are bonding interactions through-bond between the Al atoms and the terminal Cl atoms, but these are π-style and thus weaker. Through-space bonding interactions between the terminal Cl atoms are possible, but very weak because of the distance being larger and the interactions being π-type. Since Al is less electronegative than either Cl and Br, the Al contribution to this bonding orbital is smaller. Overall: a highly bonding orbital.<br /> |-<br /> | 79 || [[File:ES_MO79.PNG|150px]] || [[File:ES_LCAO79.PNG|150px]] || This orbital is also composed of p-orbitals. The p-orbitals on the Cl atoms at the same terminus are in phase, with a very weak π-type through-space bonding interaction. Between Cl atoms on opposite termini, there are extremely weak π-type through-space antibonding interactions. The p-orbitals on the bridging Br atoms are oriented orthogonally to those on the Cl atoms. Since they are oriented closer to the opposite-phase lobe of the p-orbital on the Cl atoms, the antibonding interactions will be slightly stronger. There are also weak π-type antibonding interactions between the p-orbitals on the Br atoms. The Al atoms do not contribute to this MO. Overall: non-bonding, maybe slightly antibonding.<br /> |-<br /> | 81 || [[File:ES_antibonding.PNG|150px]] || [[File:ES_LCAO81.PNG|150px]] || This orbital is also composed of p-orbitals. There are weak π-type through-space antibonding interactions between orbitals on Cl atoms at the same terminus, and between the orbitals on the bridging Br atoms. Stronger σ-type through-space antibonding interactions occur between orbitals on the bridging Br atoms and terminal Cl atoms. There are very weak π-type through-space interactions between orbitals on Cl atoms at opposite termini. As with Molecular Orbital 79, the Al atoms do not contribute to this MO. Overall: highly antibonding.<br /> |}</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=731984 2018-05-25T14:04:15Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> [[File:ES_isomers.PNG|thumb|right|The isomers of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;.]]<br /> <br /> Isomer with both Br atoms at the same terminus. Projected point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Projected point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Projected point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Projected point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Projected point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.438 Å. All bonds in the Al-Br-Al-Br bridging system were of equal length.<br /> <br /> Al-Br-Al bridging bond angle: 87.997&lt;sup&gt;o&lt;/sup&gt;<br /> <br /> Al-Cl bond length: 2.099 Å<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.53761798 a.u.<br /> <br /> RMS Gradient Norm = 0.00000456 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 13 minutes 44.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.228 Å<br /> <br /> Al-Cl bond length (bridging): 2.2975 Å and 2.2976 Å. Opposing sides of the Cl-Al-Cl-Al bridging system were equal in length. The two different Al-Cl bond lengths reduced the symmetry to C&lt;sub&gt;1&lt;/sub&gt; instead of the expected C&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Al-Cl bond length (terminal): 2.097 Å<br /> <br /> Al-Cl-Al bridging bond angle: 89.271&lt;sup&gt;o&lt;/sup&gt;. A larger angle than the Al-Br-Al bridging angle.<br /> <br /> Full log file for this computation can be found [[Media:ES TRANSISOMER OPT.LOG|here]]<br /> <br /> The energy calculated for this isomer is -7469.537618 a.u., in comparison to the bridging isomer, whose energy is -7469.542691 a.u.. Therefore the bridging isomer is lower in energy by 0.005073 a.u., which corresponds to an interconversion energy of ±13.3 kJ/mol.<br /> <br /> The molecule is more stable with Br as the bridging atoms. A plausible explanation is that Br is a larger atom than Cl, and therefore the four-atom bridging system is less strained. This is supported by several pieces of evidence from the Gaussian calculations. Firstly, there are two different Al-Cl bridging bond lengths in the trans isomer, suggesting a more strained system. In comparison, the Al-Br bonds in the bridging isomer are all equal. Al-Cl bridging bonds are also shorter than Al-Br bridging bonds, and the Al-Cl-Al bridging angle is larger than the Al-Br-Al angle. All of these indicate that Al-Cl-Al-Cl bridging system is more strained than the Al-Br-Al-Br bridging system.<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy and therefore the more stable of the two isomers. Therefore, since the isomers are able to interconvert around the Al atoms, the bridging isomer will be preferred. It can be formed by dimerisation of AlCl&lt;sub&gt;2&lt;/sub&gt;Br, which is both Lewis acidic (as it is electron deficient around the Al atom) and has Lewis base character (due to lone pairs of electrons on the halogens). In order to calculate the association energy of this process, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -3734.74851982 a.u.<br /> <br /> RMS Gradient Norm = 0.00001669 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.6912 Debye<br /> <br /> Point Group = C2V<br /> <br /> Job cpu time:       0 days  0 hours  8 minutes 44.0 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file for this optimisation can be found [[Media:ES MONOMER OPT.LOG|here]]<br /> <br /> Energy of the Br-bridging dimer: -7469.542618 a.u.<br /> <br /> Energy of AlCl&lt;sub&gt;2&lt;/sub&gt;Br: -3734.748520 a.u.<br /> <br /> Energy change at association: -0.045778 a.u.=-119.7 kJ/mol <br /> <br /> ===Molecular orbitals of the bridging isomer===<br /> <br /> A frequency analysis of the bridging isomer was carried out.<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269097 a.u.<br /> <br /> RMS Gradient Norm = 0.00004063 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  2 minutes 31.0 seconds.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000097 0.000450 YES<br /> RMS Force 0.000041 0.000300 YES<br /> Maximum Displacement 0.001672 0.001800 YES<br /> RMS Displacement 0.000687 0.001200 YES<br /> Predicted change in Energy=-1.760083D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> Full log file of the frequency computation can be found [[Media:ES BRIDGINGISOMER FREQ.LOG|here]]<br /> <br /> {| class=&quot;wikitable&quot; border=&quot;1&quot;<br /> |+ Selected molecular orbitals of the bridging isomer of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;<br /> ! MO number !! Visualised MO!!Diagram of constituent atomic orbitals!!Description<br /> |-<br /> | 72 || [[File:ES_bonding.PNG|150px]] || [[File:ES_LCAO72.PNG|150px]] || This orbital is composed of p&lt;sub&gt;z&lt;/sub&gt; orbitals, all locally in phase and thus able to interact in a bonding fashion. There is a large area of electron density between the Al atoms and the bridging Br atoms, indicating a σ-style overlap and thus a strong bonding interaction. There are bonding interactions through-bond between the Al atoms and the terminal Cl atoms, but these are π-style and thus weaker. Through-space bonding interactions between the terminal Cl atoms are possible, but very weak because of the distance being larger and the interactions being π-type. Since Al is less electronegative than either Cl and Br, the Al contribution to this bonding orbital is smaller. Overall: a highly bonding orbital.<br /> |-<br /> | 79 || [[File:ES_MO79.PNG|150px]] || [[File:ES_LCAO79.PNG|150px]] || This orbital is also composed of p-orbitals. The p-orbitals on the Cl atoms at the same terminus are in phase, with a very weak π-type through-space bonding interaction. Between Cl atoms on opposite termini, there are extremely weak π-type through-space antibonding interactions. The p-orbitals on the bridging Br atoms are oriented orthogonally to those on the Cl atoms. Since they are oriented closer to the opposite-phase lobe of the p-orbital on the Cl atoms, the antibonding interactions will be slightly stronger. There are also weak π-type antibonding interactions between the p-orbitals on the Br atoms. The Al atoms do not contribute to this MO. Overall: non-bonding, maybe slightly antibonding.<br /> |-<br /> | 81 || [[File:ES_antibonding.PNG|150px]] || [[File:ES_LCAO81.PNG|150px]] || This orbital is also composed of p-orbitals. There are weak π-type through-space antibonding interactions between orbitals on Cl atoms at the same terminus, and between the orbitals on the bridging Br atoms. Stronger σ-type through-space antibonding interactions occur between orbitals on the bridging Br atoms and terminal Cl atoms. There are very weak π-type through-space interactions between orbitals on Cl atoms at opposite termini. As with Molecular Orbital 79, the Al atoms do not contribute to this MO. Overall: highly antibonding.<br /> |}</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_isomers.PNG&diff=731971 2018-05-25T14:02:49Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=731899 2018-05-25T13:52:52Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> Isomer with both Br atoms at the same terminus. Point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.438 Å. All bonds in the Al-Br-Al-Br bridging system were of equal length.<br /> <br /> Al-Br-Al bridging bond angle: 87.997&lt;sup&gt;o&lt;/sup&gt;<br /> <br /> Al-Cl bond length: 2.099 Å<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.53761798 a.u.<br /> <br /> RMS Gradient Norm = 0.00000456 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 13 minutes 44.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.228 Å<br /> <br /> Al-Cl bond length (bridging): 2.2975 Å and 2.2976 Å. Opposing sides of the Cl-Al-Cl-Al bridging system were equal in length. The two different Al-Cl bond lengths reduced the symmetry to C&lt;sub&gt;1&lt;/sub&gt; instead of the expected C&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Al-Cl bond length (terminal): 2.097 Å<br /> <br /> Al-Cl-Al bridging bond angle: 89.271&lt;sup&gt;o&lt;/sup&gt;. A larger angle than the Al-Br-Al bridging angle.<br /> <br /> Full log file for this computation can be found [[Media:ES TRANSISOMER OPT.LOG|here]]<br /> <br /> The energy calculated for this isomer is -7469.537618 a.u., in comparison to the bridging isomer, whose energy is -7469.542691 a.u.. Therefore the bridging isomer is lower in energy by 0.005073 a.u., which corresponds to an interconversion energy of ±13.3 kJ/mol.<br /> <br /> The molecule is more stable with Br as the bridging atoms. A plausible explanation is that Br is a larger atom than Cl, and therefore the four-atom bridging system is less strained. This is supported by several pieces of evidence from the Gaussian calculations. Firstly, there are two different Al-Cl bridging bond lengths in the trans isomer, suggesting a more strained system. In comparison, the Al-Br bonds in the bridging isomer are all equal. Al-Cl bridging bonds are also shorter than Al-Br bridging bonds, and the Al-Cl-Al bridging angle is larger than the Al-Br-Al angle. All of these indicate that Al-Cl-Al-Cl bridging system is more strained than the Al-Br-Al-Br bridging system.<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy and therefore the more stable of the two isomers. Therefore, since the isomers are able to interconvert around the Al atoms, the bridging isomer will be preferred. It can be formed by dimerisation of AlCl&lt;sub&gt;2&lt;/sub&gt;Br, which is both Lewis acidic (as it is electron deficient around the Al atom) and has Lewis base character (due to lone pairs of electrons on the halogens). In order to calculate the association energy of this process, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -3734.74851982 a.u.<br /> <br /> RMS Gradient Norm = 0.00001669 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.6912 Debye<br /> <br /> Point Group = C2V<br /> <br /> Job cpu time:       0 days  0 hours  8 minutes 44.0 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file for this optimisation can be found [[Media:ES MONOMER OPT.LOG|here]]<br /> <br /> Energy of the Br-bridging dimer: -7469.542618 a.u.<br /> <br /> Energy of AlCl&lt;sub&gt;2&lt;/sub&gt;Br: -3734.748520 a.u.<br /> <br /> Energy change at association: -0.045778 a.u.=-119.7 kJ/mol <br /> <br /> ===Molecular orbitals of the bridging isomer===<br /> <br /> A frequency analysis of the bridging isomer was carried out.<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269097 a.u.<br /> <br /> RMS Gradient Norm = 0.00004063 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  2 minutes 31.0 seconds.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000097 0.000450 YES<br /> RMS Force 0.000041 0.000300 YES<br /> Maximum Displacement 0.001672 0.001800 YES<br /> RMS Displacement 0.000687 0.001200 YES<br /> Predicted change in Energy=-1.760083D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> Full log file of the frequency computation can be found [[Media:ES BRIDGINGISOMER FREQ.LOG|here]]<br /> <br /> {| class=&quot;wikitable&quot; border=&quot;1&quot;<br /> |+ Selected molecular orbitals of the bridging isomer of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;<br /> ! MO number !! Visualised MO!!Diagram of constituent atomic orbitals!!Description<br /> |-<br /> | 72 || [[File:ES_bonding.PNG|150px]] || [[File:ES_LCAO72.PNG|150px]] || This orbital is composed of p&lt;sub&gt;z&lt;/sub&gt; orbitals, all locally in phase and thus able to interact in a bonding fashion. There is a large area of electron density between the Al atoms and the bridging Br atoms, indicating a σ-style overlap and thus a strong bonding interaction. There are bonding interactions through-bond between the Al atoms and the terminal Cl atoms, but these are π-style and thus weaker. Through-space bonding interactions between the terminal Cl atoms are possible, but very weak because of the distance being larger and the interactions being π-type. Since Al is less electronegative than either Cl and Br, the Al contribution to this bonding orbital is smaller. Overall: a highly bonding orbital.<br /> |-<br /> | 79 || [[File:ES_MO79.PNG|150px]] || [[File:ES_LCAO79.PNG|150px]] || This orbital is also composed of p-orbitals. The p-orbitals on the Cl atoms at the same terminus are in phase, with a very weak π-type through-space bonding interaction. Between Cl atoms on opposite termini, there are extremely weak π-type through-space antibonding interactions. The p-orbitals on the bridging Br atoms are oriented orthogonally to those on the Cl atoms. Since they are oriented closer to the opposite-phase lobe of the p-orbital on the Cl atoms, the antibonding interactions will be slightly stronger. There are also weak π-type antibonding interactions between the p-orbitals on the Br atoms. The Al atoms do not contribute to this MO. Overall: non-bonding, maybe slightly antibonding.<br /> |-<br /> | 81 || [[File:ES_antibonding.PNG|150px]] || [[File:ES_LCAO81.PNG|150px]] || This orbital is also composed of p-orbitals. There are weak π-type through-space antibonding interactions between orbitals on Cl atoms at the same terminus, and between the orbitals on the bridging Br atoms. Stronger σ-type through-space antibonding interactions occur between orbitals on the bridging Br atoms and terminal Cl atoms. There are very weak π-type through-space interactions between orbitals on Cl atoms at opposite termini. As with Molecular Orbital 79, the Al atoms do not contribute to this MO. Overall: highly antibonding.<br /> |}</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=731834 2018-05-25T13:42:29Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> Isomer with both Br atoms at the same terminus. Point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.438. All bonds in the Al-Br-Al-Br bridging system were of equal length.<br /> <br /> Al-Br-Al bridging bond angle: 87.997&lt;sup&gt;o&lt;/sup&gt;<br /> <br /> Al-Cl bond length: 2.099<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.53761798 a.u.<br /> <br /> RMS Gradient Norm = 0.00000456 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 13 minutes 44.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.228<br /> <br /> Al-Cl bond length (bridging): 2.2975 and 2.2976. Opposing sides of the Cl-Al-Cl-Al bridging system were equal in length. The two different Al-Cl bond lengths reduced the symmetry to C&lt;sub&gt;1&lt;/sub&gt; instead of the expected C&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Al-Cl bond length (terminal): 2.097<br /> <br /> Al-Cl-Al bridging bond angle: 89.271&lt;sup&gt;o&lt;/sup&gt;. A larger angle than the Al-Br-Al bridging angle.<br /> <br /> Full log file for this computation can be found [[Media:ES TRANSISOMER OPT.LOG|here]]<br /> <br /> The energy calculated for this isomer is -7469.537618 a.u., in comparison to the bridging isomer, whose energy is -7469.542691 a.u.. Therefore the bridging isomer is lower in energy by 0.005073 a.u., which corresponds to an interconversion energy of ±13.3 kJ/mol.<br /> <br /> The molecule is more stable with Br as the bridging atoms. A plausible explanation is that Br is a larger atom than Cl, and therefore the four-atom bridging system is less strained. This is supported by several pieces of evidence from the Gaussian calculations. Firstly, there are two different Al-Cl bridging bond lengths in the trans isomer, suggesting a more strained system. In comparison, the Al-Br bonds in the bridging isomer are all equal. Al-Cl bridging bonds are also shorter than Al-Br bridging bonds, and the Al-Cl-Al bridging angle is larger than the Al-Br-Al angle. All of these indicate that Al-Cl-Al-Cl bridging system is more strained than the Al-Br-Al-Br bridging system.<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy and therefore the more stable of the two isomers. Therefore, since the isomers are able to interconvert around the Al atoms, the bridging isomer will be preferred. It can be formed by dimerisation of AlCl&lt;sub&gt;2&lt;/sub&gt;Br, which is both Lewis acidic (as it is electron deficient around the Al atom) and has Lewis base character (due to lone pairs of electrons on the halogens). In order to calculate the association energy of this process, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -3734.74851982 a.u.<br /> <br /> RMS Gradient Norm = 0.00001669 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.6912 Debye<br /> <br /> Point Group = C2V<br /> <br /> Job cpu time:       0 days  0 hours  8 minutes 44.0 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file for this optimisation can be found [[Media:ES MONOMER OPT.LOG|here]]<br /> <br /> Energy of the Br-bridging dimer: -7469.542618 a.u.<br /> <br /> Energy of AlCl&lt;sub&gt;2&lt;/sub&gt;Br: -3734.748520 a.u.<br /> <br /> Energy change at association: -0.045778 a.u.=-119.7 kJ/mol <br /> <br /> ===Molecular orbitals of the bridging isomer===<br /> <br /> A frequency analysis of the bridging isomer was carried out.<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269097 a.u.<br /> <br /> RMS Gradient Norm = 0.00004063 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  2 minutes 31.0 seconds.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000097 0.000450 YES<br /> RMS Force 0.000041 0.000300 YES<br /> Maximum Displacement 0.001672 0.001800 YES<br /> RMS Displacement 0.000687 0.001200 YES<br /> Predicted change in Energy=-1.760083D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> Full log file of the frequency computation can be found [[Media:ES BRIDGINGISOMER FREQ.LOG|here]]<br /> <br /> {| class=&quot;wikitable&quot; border=&quot;1&quot;<br /> |+ Selected molecular orbitals of the bridging isomer of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;<br /> ! MO number !! Visualised MO!!Diagram of constituent atomic orbitals!!Description<br /> |-<br /> | 72 || [[File:ES_bonding.PNG|150px]] || [[File:ES_LCAO72.PNG|150px]] || This orbital is composed of p&lt;sub&gt;z&lt;/sub&gt; orbitals, all locally in phase and thus able to interact in a bonding fashion. There is a large area of electron density between the Al atoms and the bridging Br atoms, indicating a σ-style overlap and thus a strong bonding interaction. There are bonding interactions through-bond between the Al atoms and the terminal Cl atoms, but these are π-style and thus weaker. Through-space bonding interactions between the terminal Cl atoms are possible, but very weak because of the distance being larger and the interactions being π-type. Since Al is less electronegative than either Cl and Br, the Al contribution to this bonding orbital is smaller. Overall: a highly bonding orbital.<br /> |-<br /> | 79 || [[File:ES_MO79.PNG|150px]] || [[File:ES_LCAO79.PNG|150px]] || This orbital is also composed of p-orbitals. The p-orbitals on the Cl atoms at the same terminus are in phase, with a very weak π-type through-space bonding interaction. Between Cl atoms on opposite termini, there are extremely weak π-type through-space antibonding interactions. The p-orbitals on the bridging Br atoms are oriented orthogonally to those on the Cl atoms. Since they are oriented closer to the opposite-phase lobe of the p-orbital on the Cl atoms, the antibonding interactions will be slightly stronger. There are also weak π-type antibonding interactions between the p-orbitals on the Br atoms. The Al atoms do not contribute to this MO. Overall: non-bonding, maybe slightly antibonding.<br /> |-<br /> | 81 || [[File:ES_antibonding.PNG|150px]] || [[File:ES_LCAO81.PNG|150px]] || cell<br /> |}</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=731608 2018-05-25T13:08:07Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> Isomer with both Br atoms at the same terminus. Point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.438. All bonds in the Al-Br-Al-Br bridging system were of equal length.<br /> <br /> Al-Br-Al bridging bond angle: 87.997&lt;sup&gt;o&lt;/sup&gt;<br /> <br /> Al-Cl bond length: 2.099<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.53761798 a.u.<br /> <br /> RMS Gradient Norm = 0.00000456 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 13 minutes 44.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.228<br /> <br /> Al-Cl bond length (bridging): 2.2975 and 2.2976. Opposing sides of the Cl-Al-Cl-Al bridging system were equal in length. The two different Al-Cl bond lengths reduced the symmetry to C&lt;sub&gt;1&lt;/sub&gt; instead of the expected C&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Al-Cl bond length (terminal): 2.097<br /> <br /> Al-Cl-Al bridging bond angle: 89.271&lt;sup&gt;o&lt;/sup&gt;. A larger angle than the Al-Br-Al bridging angle.<br /> <br /> Full log file for this computation can be found [[Media:ES TRANSISOMER OPT.LOG|here]]<br /> <br /> The energy calculated for this isomer is -7469.537618 a.u., in comparison to the bridging isomer, whose energy is -7469.542691 a.u.. Therefore the bridging isomer is lower in energy by 0.005073 a.u., which corresponds to an interconversion energy of ±13.3 kJ/mol.<br /> <br /> The molecule is more stable with Br as the bridging atoms. A plausible explanation is that Br is a larger atom than Cl, and therefore the four-atom bridging system is less strained. This is supported by several pieces of evidence from the Gaussian calculations. Firstly, there are two different Al-Cl bridging bond lengths in the trans isomer, suggesting a more strained system. In comparison, the Al-Br bonds in the bridging isomer are all equal. Al-Cl bridging bonds are also shorter than Al-Br bridging bonds, and the Al-Cl-Al bridging angle is larger than the Al-Br-Al angle. All of these indicate that Al-Cl-Al-Cl bridging system is more strained than the Al-Br-Al-Br bridging system.<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy and therefore the more stable of the two isomers. Therefore, since the isomers are able to interconvert around the Al atoms, the bridging isomer will be preferred. It can be formed by dimerisation of AlCl&lt;sub&gt;2&lt;/sub&gt;Br, which is both Lewis acidic (as it is electron deficient around the Al atom) and has Lewis base character (due to lone pairs of electrons on the halogens). In order to calculate the association energy of this process, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -3734.74851982 a.u.<br /> <br /> RMS Gradient Norm = 0.00001669 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.6912 Debye<br /> <br /> Point Group = C2V<br /> <br /> Job cpu time:       0 days  0 hours  8 minutes 44.0 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file for this optimisation can be found [[Media:ES MONOMER OPT.LOG|here]]<br /> <br /> Energy of the Br-bridging dimer: -7469.542618 a.u.<br /> <br /> Energy of AlCl&lt;sub&gt;2&lt;/sub&gt;Br: -3734.748520 a.u.<br /> <br /> Energy change at association: -0.045778 a.u.=-119.7 kJ/mol <br /> <br /> ===Molecular orbitals of the bridging isomer===<br /> <br /> A frequency analysis of the bridging isomer was carried out.<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269097 a.u.<br /> <br /> RMS Gradient Norm = 0.00004063 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  2 minutes 31.0 seconds.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000097 0.000450 YES<br /> RMS Force 0.000041 0.000300 YES<br /> Maximum Displacement 0.001672 0.001800 YES<br /> RMS Displacement 0.000687 0.001200 YES<br /> Predicted change in Energy=-1.760083D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> Full log file of the frequency computation can be found [[Media:ES BRIDGINGISOMER FREQ.LOG|here]]<br /> <br /> {| class=&quot;wikitable&quot; border=&quot;1&quot;<br /> |+ Selected molecular orbitals of the bridging isomer of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;<br /> ! MO number !! Visualised MO!!Diagram of constituent atomic orbitals!!Description<br /> |-<br /> | 72 || [[File:ES_bonding.PNG|150px]] || [[File:ES_LCAO72.PNG|150px]] || cell<br /> |-<br /> | 79 || [[File:ES_MO79.PNG|150px]] || [[File:ES_LCAO79.PNG|150px]] || cell<br /> |-<br /> | 81 || [[File:ES_antibonding.PNG|150px]] || [[File:ES_LCAO81.PNG|150px]] || cell<br /> |}</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_LCAO81.PNG&diff=731595 2018-05-25T13:06:12Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_LCAO79.PNG&diff=731594 2018-05-25T13:05:52Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_LCAO72.PNG&diff=731593 2018-05-25T13:05:27Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=731516 2018-05-25T12:51:40Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> Isomer with both Br atoms at the same terminus. Point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.438. All bonds in the Al-Br-Al-Br bridging system were of equal length.<br /> <br /> Al-Br-Al bridging bond angle: 87.997&lt;sup&gt;o&lt;/sup&gt;<br /> <br /> Al-Cl bond length: 2.099<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.53761798 a.u.<br /> <br /> RMS Gradient Norm = 0.00000456 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 13 minutes 44.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.228<br /> <br /> Al-Cl bond length (bridging): 2.2975 and 2.2976. Opposing sides of the Cl-Al-Cl-Al bridging system were equal in length. The two different Al-Cl bond lengths reduced the symmetry to C&lt;sub&gt;1&lt;/sub&gt; instead of the expected C&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Al-Cl bond length (terminal): 2.097<br /> <br /> Al-Cl-Al bridging bond angle: 89.271&lt;sup&gt;o&lt;/sup&gt;. A larger angle than the Al-Br-Al bridging angle.<br /> <br /> Full log file for this computation can be found [[Media:ES TRANSISOMER OPT.LOG|here]]<br /> <br /> The energy calculated for this isomer is -7469.537618 a.u., in comparison to the bridging isomer, whose energy is -7469.542691 a.u.. Therefore the bridging isomer is lower in energy by 0.005073 a.u., which corresponds to an interconversion energy of ±13.3 kJ/mol.<br /> <br /> The molecule is more stable with Br as the bridging atoms. A plausible explanation is that Br is a larger atom than Cl, and therefore the four-atom bridging system is less strained. This is supported by several pieces of evidence from the Gaussian calculations. Firstly, there are two different Al-Cl bridging bond lengths in the trans isomer, suggesting a more strained system. In comparison, the Al-Br bonds in the bridging isomer are all equal. Al-Cl bridging bonds are also shorter than Al-Br bridging bonds, and the Al-Cl-Al bridging angle is larger than the Al-Br-Al angle. All of these indicate that Al-Cl-Al-Cl bridging system is more strained than the Al-Br-Al-Br bridging system.<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy and therefore the more stable of the two isomers. Therefore, since the isomers are able to interconvert around the Al atoms, the bridging isomer will be preferred. It can be formed by dimerisation of AlCl&lt;sub&gt;2&lt;/sub&gt;Br, which is both Lewis acidic (as it is electron deficient around the Al atom) and has Lewis base character (due to lone pairs of electrons on the halogens). In order to calculate the association energy of this process, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -3734.74851982 a.u.<br /> <br /> RMS Gradient Norm = 0.00001669 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.6912 Debye<br /> <br /> Point Group = C2V<br /> <br /> Job cpu time:       0 days  0 hours  8 minutes 44.0 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file for this optimisation can be found [[Media:ES MONOMER OPT.LOG|here]]<br /> <br /> Energy of the Br-bridging dimer: -7469.542618 a.u.<br /> <br /> Energy of AlCl&lt;sub&gt;2&lt;/sub&gt;Br: -3734.748520 a.u.<br /> <br /> Energy change at association: -0.045778 a.u.=-119.7 kJ/mol <br /> <br /> ===Molecular orbitals of the bridging isomer===<br /> <br /> A frequency analysis of the bridging isomer was carried out.<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269097 a.u.<br /> <br /> RMS Gradient Norm = 0.00004063 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  2 minutes 31.0 seconds.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000097 0.000450 YES<br /> RMS Force 0.000041 0.000300 YES<br /> Maximum Displacement 0.001672 0.001800 YES<br /> RMS Displacement 0.000687 0.001200 YES<br /> Predicted change in Energy=-1.760083D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> Full log file of the frequency computation can be found [[Media:ES BRIDGINGISOMER FREQ.LOG|here]]<br /> <br /> {| class=&quot;wikitable&quot; border=&quot;1&quot;<br /> |+ Selected molecular orbitals of the bridging isomer of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;<br /> ! MO number !! Visualised MO!!Diagram of constituent atomic orbitals!!Description<br /> |-<br /> | 72 || [[File:ES_bonding.PNG|150px]] || cell || cell<br /> |-<br /> | 79 || [[File:ES_MO79.PNG|150px]] || cell || cell<br /> |-<br /> | 81 || [[File:ES_antibonding.PNG|150px]] || cell || cell<br /> |}</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_MO79.PNG&diff=731511 2018-05-25T12:49:49Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=731473 2018-05-25T12:43:05Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> Isomer with both Br atoms at the same terminus. Point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.438. All bonds in the Al-Br-Al-Br bridging system were of equal length.<br /> <br /> Al-Br-Al bridging bond angle: 87.997&lt;sup&gt;o&lt;/sup&gt;<br /> <br /> Al-Cl bond length: 2.099<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.53761798 a.u.<br /> <br /> RMS Gradient Norm = 0.00000456 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 13 minutes 44.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.228<br /> <br /> Al-Cl bond length (bridging): 2.2975 and 2.2976. Opposing sides of the Cl-Al-Cl-Al bridging system were equal in length. The two different Al-Cl bond lengths reduced the symmetry to C&lt;sub&gt;1&lt;/sub&gt; instead of the expected C&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Al-Cl bond length (terminal): 2.097<br /> <br /> Al-Cl-Al bridging bond angle: 89.271&lt;sup&gt;o&lt;/sup&gt;. A larger angle than the Al-Br-Al bridging angle.<br /> <br /> Full log file for this computation can be found [[Media:ES TRANSISOMER OPT.LOG|here]]<br /> <br /> The energy calculated for this isomer is -7469.537618 a.u., in comparison to the bridging isomer, whose energy is -7469.542691 a.u.. Therefore the bridging isomer is lower in energy by 0.005073 a.u., which corresponds to an interconversion energy of ±13.3 kJ/mol.<br /> <br /> The molecule is more stable with Br as the bridging atoms. A plausible explanation is that Br is a larger atom than Cl, and therefore the four-atom bridging system is less strained. This is supported by several pieces of evidence from the Gaussian calculations. Firstly, there are two different Al-Cl bridging bond lengths in the trans isomer, suggesting a more strained system. In comparison, the Al-Br bonds in the bridging isomer are all equal. Al-Cl bridging bonds are also shorter than Al-Br bridging bonds, and the Al-Cl-Al bridging angle is larger than the Al-Br-Al angle. All of these indicate that Al-Cl-Al-Cl bridging system is more strained than the Al-Br-Al-Br bridging system.<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy and therefore the more stable of the two isomers. Therefore, since the isomers are able to interconvert around the Al atoms, the bridging isomer will be preferred. It can be formed by dimerisation of AlCl&lt;sub&gt;2&lt;/sub&gt;Br, which is both Lewis acidic (as it is electron deficient around the Al atom) and has Lewis base character (due to lone pairs of electrons on the halogens). In order to calculate the association energy of this process, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -3734.74851982 a.u.<br /> <br /> RMS Gradient Norm = 0.00001669 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.6912 Debye<br /> <br /> Point Group = C2V<br /> <br /> Job cpu time:       0 days  0 hours  8 minutes 44.0 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file for this optimisation can be found [[Media:ES MONOMER OPT.LOG|here]]<br /> <br /> Energy of the Br-bridging dimer: -7469.542618 a.u.<br /> <br /> Energy of AlCl&lt;sub&gt;2&lt;/sub&gt;Br: -3734.748520 a.u.<br /> <br /> Energy change at association: -0.045778 a.u.=-119.7 kJ/mol <br /> <br /> ===Molecular orbitals of the bridging isomer===<br /> <br /> A frequency analysis of the bridging isomer was carried out.<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269097 a.u.<br /> <br /> RMS Gradient Norm = 0.00004063 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  2 minutes 31.0 seconds.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000097 0.000450 YES<br /> RMS Force 0.000041 0.000300 YES<br /> Maximum Displacement 0.001672 0.001800 YES<br /> RMS Displacement 0.000687 0.001200 YES<br /> Predicted change in Energy=-1.760083D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> Full log file of the frequency computation can be found [[Media:ES BRIDGINGISOMER FREQ.LOG|here]]<br /> <br /> {| class=&quot;wikitable&quot; border=&quot;1&quot;<br /> |+ Selected molecular orbitals of the bridging isomer of Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt;<br /> ! MO number !! Visualised MO!!Diagram of constituent atomic orbitals!!Description<br /> |-<br /> | cell || [[File:ES_bonding.PNG|150px]] || cell || cell<br /> |-<br /> | cell || [[File:ES_intermediate.PNG|150px]] || cell || cell<br /> |-<br /> | cell || [[File:ES_antibonding.PNG|150px]] || cell || cell<br /> |}</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_bonding.PNG&diff=731458 2018-05-25T12:39:54Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_intermediate.PNG&diff=731454 2018-05-25T12:39:15Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_antibonding.PNG&diff=731451 2018-05-25T12:38:42Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=731410 2018-05-25T12:26:38Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> Isomer with both Br atoms at the same terminus. Point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.438. All bonds in the Al-Br-Al-Br bridging system were of equal length.<br /> <br /> Al-Br-Al bridging bond angle: 87.997&lt;sup&gt;o&lt;/sup&gt;<br /> <br /> Al-Cl bond length: 2.099<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.53761798 a.u.<br /> <br /> RMS Gradient Norm = 0.00000456 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 13 minutes 44.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Al-Br bond length: 2.228<br /> <br /> Al-Cl bond length (bridging): 2.2975 and 2.2976. Opposing sides of the Cl-Al-Cl-Al bridging system were equal in length. The two different Al-Cl bond lengths reduced the symmetry to C&lt;sub&gt;1&lt;/sub&gt; instead of the expected C&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Al-Cl bond length (terminal): 2.097<br /> <br /> Al-Cl-Al bridging bond angle: 89.271&lt;sup&gt;o&lt;/sup&gt;. A larger angle than the Al-Br-Al bridging angle.<br /> <br /> Full log file for this computation can be found [[Media:ES TRANSISOMER OPT.LOG|here]]<br /> <br /> The energy calculated for this isomer is -7469.537618 a.u., in comparison to the bridging isomer, whose energy is -7469.542691 a.u.. Therefore the bridging isomer is lower in energy by 0.005073 a.u., which corresponds to an interconversion energy of ±13.3 kJ/mol.<br /> <br /> The molecule is more stable with Br as the bridging atoms. A plausible explanation is that Br is a larger atom than Cl, and therefore the four-atom bridging system is less strained. This is supported by several pieces of evidence from the Gaussian calculations. Firstly, there are two different Al-Cl bridging bond lengths in the trans isomer, suggesting a more strained system. In comparison, the Al-Br bonds in the bridging isomer are all equal. Al-Cl bridging bonds are also shorter than Al-Br bridging bonds, and the Al-Cl-Al bridging angle is larger than the Al-Br-Al angle. All of these indicate that Al-Cl-Al-Cl bridging system is more strained than the Al-Br-Al-Br bridging system.<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy and therefore the more stable of the two isomers. Therefore, since the isomers are able to interconvert around the Al atoms, the bridging isomer will be preferred. It can be formed by dimerisation of AlCl&lt;sub&gt;2&lt;/sub&gt;Br, which is both Lewis acidic (as it is electron deficient around the Al atom) and has Lewis base character (due to lone pairs of electrons on the halogens). In order to calculate the association energy of this process, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -3734.74851982 a.u.<br /> <br /> RMS Gradient Norm = 0.00001669 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.6912 Debye<br /> <br /> Point Group = C2V<br /> <br /> Job cpu time:       0 days  0 hours  8 minutes 44.0 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file for this optimisation can be found [[Media:ES MONOMER OPT.LOG|here]]<br /> <br /> Energy of the Br-bridging dimer: -7469.542618 a.u.<br /> <br /> Energy of AlCl&lt;sub&gt;2&lt;/sub&gt;Br: -3734.748520 a.u.<br /> <br /> Energy change at association: -0.045778 a.u.=-119.7 kJ/mol <br /> <br /> ===Molecular orbitals of the bridging isomer===<br /> <br /> A frequency analysis of the bridging isomer was carried out.<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269097 a.u.<br /> <br /> RMS Gradient Norm = 0.00004063 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  2 minutes 31.0 seconds.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000097 0.000450 YES<br /> RMS Force 0.000041 0.000300 YES<br /> Maximum Displacement 0.001672 0.001800 YES<br /> RMS Displacement 0.000687 0.001200 YES<br /> Predicted change in Energy=-1.760083D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> Full log file of the frequency computation can be found [[Media:ES BRIDGINGISOMER FREQ.LOG|here]]</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=731267 2018-05-25T11:28:07Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> Isomer with both Br atoms at the same terminus. Point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file for this computation can be found [[Media:ES TRANSISOMER OPT.LOG|here]]<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy. In order to calculate the association energy, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file for this optimisation can be found [[Media:ES MONOMER OPT.LOG|here]]<br /> <br /> ===Molecular orbitals of the bridging isomer===<br /> <br /> A frequency analysis of the bridging isomer was carried out.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000097 0.000450 YES<br /> RMS Force 0.000041 0.000300 YES<br /> Maximum Displacement 0.001672 0.001800 YES<br /> RMS Displacement 0.000687 0.001200 YES<br /> Predicted change in Energy=-1.760083D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> Full log file of the frequency computation can be found [[Media:ES BRIDGINGISOMER FREQ.LOG|here]]</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_MONOMER_OPT.LOG&diff=729634 2018-05-24T15:39:36Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_TRANSISOMER_OPT.LOG&diff=729631 2018-05-24T15:39:18Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_BRIDGINGISOMER_FREQ.LOG&diff=729626 2018-05-24T15:38:45Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=729613 2018-05-24T15:37:38Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> Isomer with both Br atoms at the same terminus. Point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy. In order to calculate the association energy, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> <br /> ===Molecular orbitals of the bridging isomer===<br /> <br /> A frequency analysis of the bridging isomer was carried out.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000097 0.000450 YES<br /> RMS Force 0.000041 0.000300 YES<br /> Maximum Displacement 0.001672 0.001800 YES<br /> RMS Displacement 0.000687 0.001200 YES<br /> Predicted change in Energy=-1.760083D-07<br /> Optimization completed.<br /> -- Stationary point found.</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=729561 2018-05-24T15:31:14Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> Isomer with both Br atoms at the same terminus. Point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000007 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000108 0.001800 YES<br /> RMS Displacement 0.000050 0.001200 YES<br /> Predicted change in Energy=-1.700479D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,4) 2.0968 -DE/DX = 0.0 !<br /> ! R2 R(1,5) 2.2975 -DE/DX = 0.0 !<br /> ! R3 R(1,6) 2.2976 -DE/DX = 0.0 !<br /> ! R4 R(1,8) 2.2285 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0968 -DE/DX = 0.0 !<br /> ! R6 R(2,5) 2.2976 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.2975 -DE/DX = 0.0 !<br /> ! R8 R(2,7) 2.2285 -DE/DX = 0.0 !<br /> ! A1 A(4,1,5) 108.9637 -DE/DX = 0.0 !<br /> ! A2 A(4,1,6) 108.9617 -DE/DX = 0.0 !<br /> ! A3 A(4,1,8) 122.7391 -DE/DX = 0.0 !<br /> ! A4 A(5,1,6) 90.7293 -DE/DX = 0.0 !<br /> ! A5 A(5,1,8) 110.3804 -DE/DX = 0.0 !<br /> ! A6 A(6,1,8) 110.3783 -DE/DX = 0.0 !<br /> ! A7 A(3,2,5) 108.9619 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 108.9642 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 122.7396 -DE/DX = 0.0 !<br /> ! A10 A(5,2,6) 90.7286 -DE/DX = 0.0 !<br /> ! A11 A(5,2,7) 110.3778 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 110.3799 -DE/DX = 0.0 !<br /> ! A13 A(1,5,2) 89.2707 -DE/DX = 0.0 !<br /> ! A14 A(1,6,2) 89.2714 -DE/DX = 0.0 !<br /> ! D1 D(4,1,5,2) 110.3536 -DE/DX = 0.0 !<br /> ! D2 D(6,1,5,2) -0.0106 -DE/DX = 0.0 !<br /> ! D3 D(8,1,5,2) -112.1109 -DE/DX = 0.0 !<br /> ! D4 D(4,1,6,2) -110.3555 -DE/DX = 0.0 !<br /> ! D5 D(5,1,6,2) 0.0106 -DE/DX = 0.0 !<br /> ! D6 D(8,1,6,2) 112.1128 -DE/DX = 0.0 !<br /> ! D7 D(3,2,5,1) 110.3769 -DE/DX = 0.0 !<br /> ! D8 D(6,2,5,1) 0.0106 -DE/DX = 0.0 !<br /> ! D9 D(7,2,5,1) -112.0908 -DE/DX = 0.0 !<br /> ! D10 D(3,2,6,1) -110.3748 -DE/DX = 0.0 !<br /> ! D11 D(5,2,6,1) -0.0106 -DE/DX = 0.0 !<br /> ! D12 D(7,2,6,1) 112.0888 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> ===Association energy of the bridging isomer===<br /> <br /> The bridging isomer is lower in energy. In order to calculate the association energy, optimisation of the monomer AlCl&lt;sub&gt;2&lt;/sub&gt;Br can be carried out.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000021 0.000450 YES<br /> RMS Force 0.000014 0.000300 YES<br /> Maximum Displacement 0.000164 0.001800 YES<br /> RMS Displacement 0.000105 0.001200 YES<br /> Predicted change in Energy=-5.066756D-09<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 2.2235 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 2.0912 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 2.0912 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 121.075 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 121.075 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 117.8499 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> <br /> ===Molecular orbitals of the bridging isomer===</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=729417 2018-05-24T15:13:40Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> Isomer with both Br atoms at the same terminus. Point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -7469.54269098 a.u.<br /> <br /> RMS Gradient Norm = 0.00004062 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0007 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours 12 minutes 26.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> <br /> ===Molecular orbitals of the isomer===</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=729250 2018-05-24T14:51:48Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> ==Part 2: Project section-Lewis acids and bases==<br /> <br /> Al&lt;sub&gt;2&lt;/sub&gt;Cl&lt;sub&gt;4&lt;/sub&gt;Br&lt;sub&gt;2&lt;/sub&gt; exists as a Lewis acid-base pair with a number of different isomers:<br /> <br /> Isomer with both Br atoms at the same terminus. Point group C&lt;sub&gt;2v&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms bridging. Point group D&lt;sub&gt;2h&lt;/sub&gt;.<br /> <br /> Isomer with one Br atom bridging and the other terminal. Point group C&lt;sub&gt;1&lt;/sub&gt;.<br /> <br /> Isomer with both Br atoms at opposite termini, cis to one another. Point group C&lt;sub&gt;2v&lt;/sub&gt;<br /> <br /> Isomer with both Br atoms at opposite termini, trans to one another. Point group C&lt;sub&gt;2h&lt;/sub&gt;<br /> <br /> ===Isomer with both Br atoms bridging===<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000059 0.000450 YES<br /> RMS Force 0.000027 0.000300 YES<br /> Maximum Displacement 0.000842 0.001800 YES<br /> RMS Displacement 0.000508 0.001200 YES<br /> Predicted change in Energy=-1.390005D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,5) 2.0991 -DE/DX = 0.0 !<br /> ! R2 R(1,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R3 R(1,7) 2.4383 -DE/DX = 0.0001 !<br /> ! R4 R(1,8) 2.0991 -DE/DX = 0.0 !<br /> ! R5 R(2,3) 2.0991 -DE/DX = 0.0 !<br /> ! R6 R(2,4) 2.0991 -DE/DX = 0.0 !<br /> ! R7 R(2,6) 2.4383 -DE/DX = 0.0001 !<br /> ! R8 R(2,7) 2.4383 -DE/DX = 0.0001 !<br /> ! A1 A(5,1,6) 110.2584 -DE/DX = 0.0 !<br /> ! A2 A(5,1,7) 110.2593 -DE/DX = 0.0 !<br /> ! A3 A(5,1,8) 120.2025 -DE/DX = 0.0 !<br /> ! A4 A(6,1,7) 92.0028 -DE/DX = 0.0 !<br /> ! A5 A(6,1,8) 110.2587 -DE/DX = 0.0 !<br /> ! A6 A(7,1,8) 110.2577 -DE/DX = 0.0 !<br /> ! A7 A(3,2,4) 120.2025 -DE/DX = 0.0 !<br /> ! A8 A(3,2,6) 110.259 -DE/DX = 0.0 !<br /> ! A9 A(3,2,7) 110.2586 -DE/DX = 0.0 !<br /> ! A10 A(4,2,6) 110.2581 -DE/DX = 0.0 !<br /> ! A11 A(4,2,7) 110.2585 -DE/DX = 0.0 !<br /> ! A12 A(6,2,7) 92.0028 -DE/DX = 0.0 !<br /> ! A13 A(1,6,2) 87.9972 -DE/DX = 0.0 !<br /> ! A14 A(1,7,2) 87.9971 -DE/DX = 0.0 !<br /> ! D1 D(5,1,6,2) 112.4854 -DE/DX = 0.0 !<br /> ! D2 D(7,1,6,2) 0.0133 -DE/DX = 0.0 !<br /> ! D3 D(8,1,6,2) -112.4572 -DE/DX = 0.0 !<br /> ! D4 D(5,1,7,2) -112.4846 -DE/DX = 0.0 !<br /> ! D5 D(6,1,7,2) -0.0133 -DE/DX = 0.0 !<br /> ! D6 D(8,1,7,2) 112.4581 -DE/DX = 0.0 !<br /> ! D7 D(3,2,6,1) 112.4582 -DE/DX = 0.0 !<br /> ! D8 D(4,2,6,1) -112.4845 -DE/DX = 0.0 !<br /> ! D9 D(7,2,6,1) -0.0133 -DE/DX = 0.0 !<br /> ! D10 D(3,2,7,1) -112.4585 -DE/DX = 0.0 !<br /> ! D11 D(4,2,7,1) 112.4841 -DE/DX = 0.0 !<br /> ! D12 D(6,2,7,1) 0.0133 -DE/DX = 0.0 !<br /> -------------------------------------------------------------<br /> <br /> Full log file can be found [[Media:ES BRIDGINGISOMER OPT.LOG|here]]<br /> <br /> ===Isomer with both Br atoms terminal and trans===<br /> <br /> ===Molecular orbitals of the isomer===</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_BRIDGINGISOMER_OPT.LOG&diff=729233 2018-05-24T14:50:06Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=728905 2018-05-24T14:00:33Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> {{DOI|202645/to-xyz}}<br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=728872 2018-05-24T13:55:42Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> [[File:ES_bbr3_vibrations.PNG|thumb|left|The vibrational modes of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bbr3_IRspec.PNG|thumb|right|Predicted IR spectrum of BBr&lt;sub&gt;3&lt;/sub&gt;.]]<br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_bbr3_vibrations.PNG&diff=728856 2018-05-24T13:52:20Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_bbr3_IRspec.PNG&diff=728853 2018-05-24T13:52:06Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=728850 2018-05-24T13:51:25Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000392 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 36.3 seconds.<br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> 6 vibrational modes were found, including two sets of two degenerate modes each. One mode is IR inactive; one of the degenerate sets has intensity so small it does not appear on the spectrum. Another mode gives a small peak easy to overlook. Only one peak is easily noticed on the spectrum.<br /> <br /> All the frequencies are lower than in the BH&lt;sub&gt;3&lt;/sub&gt; spectrum, possibly because Br is a heavier atom than B.<br /> <br /> Also noticeable is the fact that the symmetric bend in BBr&lt;sub&gt;3&lt;/sub&gt; is higher in frequency relative to the other vibrational modes than in BH&lt;sub&gt;3&lt;/sub&gt;. <br /> <br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=728762 2018-05-24T13:40:32Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> A frequency analysis was then carried out.<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000004 0.000300 YES<br /> Maximum Displacement 0.000037 0.001800 YES<br /> RMS Displacement 0.000018 0.001200 YES<br /> Predicted change in Energy=-4.301212D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> 6 vibrational modes were found.<br /> <br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=728437 2018-05-24T12:50:10Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = Gen<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -64.43644947 a.u.<br /> <br /> RMS Gradient Norm = 0.00000384 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 31.6 seconds.<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=728425 2018-05-24T12:48:02Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;===<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=728417 2018-05-24T12:46:36Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ===BBr&lt;sub&gt;3&lt;/sub&gt;<br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000008 0.000450 YES<br /> RMS Force 0.000005 0.000300 YES<br /> Maximum Displacement 0.000036 0.001800 YES<br /> RMS Displacement 0.000024 0.001200 YES<br /> Predicted change in Energy=-4.085961D-10<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.934 -DE/DX = 0.0 !<br /> ! R2 R(1,3) 1.934 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.934 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=726217 2018-05-22T15:43:57Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the final optimisation calculation [[Media:ES BH3 NEWSYM OPT.LOG|here]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> Log file of the frequency calculation [[Media:ES BH3 FREQNEW.LOG|here]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the NH&lt;sub&gt;3&lt;/sub&gt; optimisation can be found [[Media:ES NH3 OPT.LOG|here]]<br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Log file of the aminoborane optimisation can be found [[Media:ES AMINOBORANE OPT.LOG|here]]<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_NH3_OPT.LOG&diff=726205 2018-05-22T15:42:33Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_AMINOBORANE_OPT.LOG&diff=726158 2018-05-22T15:38:50Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=726148 2018-05-22T15:37:38Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> [[Media:ES BH3 NEWSYM OPT.LOG|The log file of the optimisation calculation]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> [[Media:ES BH3 FREQNEW.LOG|The log file of the frequency calculation]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> ====Final association calculation====<br /> Energy of BH&lt;sub&gt;3&lt;/sub&gt;: -26.615323 a.u.<br /> <br /> Energy of NH&lt;sub&gt;3&lt;/sub&gt;: -56.557769 a.u.<br /> <br /> Energy of aminoborane: -83.224689 a.u.<br /> <br /> Energy change= -0.051678 a.u. = -135.68 kJ/mol<br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=726026 2018-05-22T15:27:10Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> [[Media:ES BH3 NEWSYM OPT.LOG|The log file of the optimisation calculation]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> [[Media:ES BH3 FREQNEW.LOG|The log file of the frequency calculation]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000815 0.001800 YES<br /> RMS Displacement 0.000435 0.001200 YES<br /> Predicted change in Energy=-4.459583D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) -180.0001 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) -179.9887 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=726013 2018-05-22T15:26:11Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> [[Media:ES BH3 NEWSYM OPT.LOG|The log file of the optimisation calculation]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> [[Media:ES BH3 FREQNEW.LOG|The log file of the frequency calculation]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> ====Optimisation of aminoborane====<br /> <br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -83.22468856 a.u.<br /> <br /> RMS Gradient Norm = 0.00011867 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 5.5649 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 23.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.001147 0.001800 YES<br /> RMS Displacement 0.000532 0.001200 YES<br /> Predicted change in Energy=-4.941941D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) 179.9999 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) 180.0113 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=725923 2018-05-22T15:17:19Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> [[Media:ES BH3 NEWSYM OPT.LOG|The log file of the optimisation calculation]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> [[Media:ES BH3 FREQNEW.LOG|The log file of the frequency calculation]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> ====Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> ====Optimisation of aminoborane====<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000279 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.001147 0.001800 YES<br /> RMS Displacement 0.000532 0.001200 YES<br /> Predicted change in Energy=-4.941941D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,8) 1.0188 -DE/DX = -0.0002 !<br /> ! R2 R(2,8) 1.0187 -DE/DX = -0.0002 !<br /> ! R3 R(3,8) 1.0185 -DE/DX = 0.0 !<br /> ! R4 R(4,7) 1.2097 -DE/DX = 0.0 !<br /> ! R5 R(5,7) 1.2104 -DE/DX = -0.0003 !<br /> ! R6 R(6,7) 1.2101 -DE/DX = -0.0002 !<br /> ! R7 R(7,8) 1.6684 -DE/DX = -0.0002 !<br /> ! A1 A(4,7,5) 113.8833 -DE/DX = 0.0 !<br /> ! A2 A(4,7,6) 113.893 -DE/DX = 0.0 !<br /> ! A3 A(4,7,8) 104.6021 -DE/DX = 0.0 !<br /> ! A4 A(5,7,6) 113.8649 -DE/DX = 0.0 !<br /> ! A5 A(5,7,8) 104.5766 -DE/DX = 0.0 !<br /> ! A6 A(6,7,8) 104.589 -DE/DX = 0.0 !<br /> ! A7 A(1,8,2) 107.8646 -DE/DX = 0.0 !<br /> ! A8 A(1,8,3) 107.8547 -DE/DX = 0.0 !<br /> ! A9 A(1,8,7) 111.0348 -DE/DX = 0.0 !<br /> ! A10 A(2,8,3) 107.8582 -DE/DX = 0.0 !<br /> ! A11 A(2,8,7) 111.0425 -DE/DX = 0.0 !<br /> ! A12 A(3,8,7) 111.0391 -DE/DX = 0.0 !<br /> ! D1 D(4,7,8,1) 179.9999 -DE/DX = 0.0 !<br /> ! D2 D(4,7,8,2) -59.9935 -DE/DX = 0.0 !<br /> ! D3 D(4,7,8,3) 60.008 -DE/DX = 0.0 !<br /> ! D4 D(5,7,8,1) -59.9967 -DE/DX = 0.0 !<br /> ! D5 D(5,7,8,2) 60.0099 -DE/DX = 0.0 !<br /> ! D6 D(5,7,8,3) 180.0113 -DE/DX = 0.0 !<br /> ! D7 D(6,7,8,1) 59.98 -DE/DX = 0.0 !<br /> ! D8 D(6,7,8,2) 179.9866 -DE/DX = 0.0 !<br /> ! D9 D(6,7,8,3) -60.0119 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=725912 2018-05-22T15:16:13Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> [[Media:ES BH3 NEWSYM OPT.LOG|The log file of the optimisation calculation]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> [[Media:ES BH3 FREQNEW.LOG|The log file of the frequency calculation]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> Optimisation of NH&lt;sub&gt;3&lt;/sub&gt;<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -56.55776870 a.u.<br /> <br /> RMS Gradient Norm = 0.00011018 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 1.8460 Debye<br /> <br /> Point Group = C1<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes 56.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> Optimisation of aminoborane<br /> <br /> <br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=725803 2018-05-22T15:03:22Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> [[Media:ES BH3 NEWSYM OPT.LOG|The log file of the optimisation calculation]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> [[Media:ES BH3 FREQNEW.LOG|The log file of the frequency calculation]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> ===Lewis acid-base pair===<br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000182 0.000450 YES<br /> RMS Force 0.000093 0.000300 YES<br /> Maximum Displacement 0.000235 0.001800 YES<br /> RMS Displacement 0.000183 0.001200 YES<br /> Predicted change in Energy=-7.297706D-08<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.0178 -DE/DX = 0.0002 !<br /> ! R2 R(1,3) 1.0182 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.018 -DE/DX = 0.0 !<br /> ! A1 A(2,1,3) 105.7533 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 105.7627 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 105.7444 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) -111.881 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=725701 2018-05-22T14:52:40Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> [[Media:ES BH3 NEWSYM OPT.LOG|The log file of the optimisation calculation]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> [[Media:ES BH3 FREQNEW.LOG|The log file of the frequency calculation]]<br /> <br /> [[File:ES_bh3_MOdiag.PNG|300px|thumb|left|Rough MO diagram for BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> [[File:ES_bh3_orbitals.PNG|500px|thumb|right|8 lowest-in-energy computed MOs for BH&lt;sub&gt;3&lt;/sub&gt;, corresponding to the MO diagram on the left..]]<br /> ===Lewis acid-base pair===<br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_bh3_orbitals.PNG&diff=725641 2018-05-22T14:46:15Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_bh3_MOdiag.PNG&diff=725635 2018-05-22T14:45:49Z

<p>Es4215: </p> <hr /> <div></div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=Es4215_2nd_yr_Inorganic_Comp&diff=725294 2018-05-22T13:59:16Z

<p>Es4215: </p> <hr /> <div>==Part 1: BH&lt;sub&gt;3&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;==<br /> ===BH&lt;sub&gt;3&lt;/sub&gt;===<br /> ====First optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 3-21G<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.46226371 a.u.<br /> <br /> RMS Gradient Norm = 0.00008756 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 10.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000217 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000692 0.001800 YES<br /> RMS Displacement 0.000441 0.001200 YES<br /> Predicted change in Energy=-1.635268D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1947 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1944 -DE/DX = -0.0001 !<br /> ! R3 R(1,4) 1.1948 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.9989 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0157 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9855 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> <br /> <br /> ====Second optimisation====<br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532350 a.u.<br /> <br /> RMS Gradient Norm = 0.00008174 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0003 Debye<br /> <br /> Point Group = CS<br /> <br /> Job cpu time:       0 days  0 hours  3 minutes 19.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000203 0.000450 YES<br /> RMS Force 0.000098 0.000300 YES<br /> Maximum Displacement 0.000867 0.001800 YES<br /> RMS Displacement 0.000415 0.001200 YES<br /> Predicted change in Energy=-1.436134D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1926 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1924 -DE/DX = 0.0 !<br /> ! R3 R(1,4) 1.1928 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 119.999 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0146 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 119.9864 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> After constraining the symmetry to D3H:<br /> <br /> Calculation Type = FOPT<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008043 a.u.<br /> <br /> Imaginary Freq = <br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  0 minutes 32.0 seconds.<br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000105 0.000300 YES<br /> Maximum Displacement 0.000638 0.001800 YES<br /> RMS Displacement 0.000418 0.001200 YES<br /> Predicted change in Energy=-1.539716D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> ----------------------------<br /> ! Optimized Parameters !<br /> ! (Angstroms and Degrees) !<br /> -------------------------- --------------------------<br /> ! Name Definition Value Derivative Info. !<br /> --------------------------------------------------------------------------------<br /> ! R1 R(1,2) 1.1927 -DE/DX = -0.0002 !<br /> ! R2 R(1,3) 1.1927 -DE/DX = -0.0002 !<br /> ! R3 R(1,4) 1.1927 -DE/DX = -0.0002 !<br /> ! A1 A(2,1,3) 120.0 -DE/DX = 0.0 !<br /> ! A2 A(2,1,4) 120.0 -DE/DX = 0.0 !<br /> ! A3 A(3,1,4) 120.0 -DE/DX = 0.0 !<br /> ! D1 D(2,1,4,3) 180.0 -DE/DX = 0.0 !<br /> --------------------------------------------------------------------------------<br /> <br /> [[Media:ES BH3 NEWSYM OPT.LOG|The log file of the optimisation calculation]]<br /> <br /> Frequency calculation for the BH&lt;sub&gt;3&lt;/sub&gt; molecule<br /> <br /> Calculation Type = FREQ<br /> <br /> Calculation Method = RB3LYP<br /> <br /> Basis Set = 6-31G(d,p)<br /> <br /> Charge = 0<br /> <br /> Spin = Singlet<br /> <br /> E(RB3LYP) = -26.61532349 a.u.<br /> <br /> RMS Gradient Norm = 0.00008047 a.u.<br /> <br /> Imaginary Freq = 0<br /> <br /> Dipole Moment = 0.0000 Debye<br /> <br /> Point Group = D3H<br /> <br /> Job cpu time:       0 days  0 hours  1 minutes  3.0 seconds.<br /> <br /> <br /> <br /> <br /> Item Value Threshold Converged?<br /> Maximum Force 0.000161 0.000450 YES<br /> RMS Force 0.000080 0.000300 YES<br /> Maximum Displacement 0.000634 0.001800 YES<br /> RMS Displacement 0.000317 0.001200 YES<br /> Predicted change in Energy=-1.529731D-07<br /> Optimization completed.<br /> -- Stationary point found.<br /> <br /> <br /> Low frequencies --- -0.1187 -0.0051 -0.0013 42.2482 42.2484 43.3387<br /> Low frequencies --- 1163.5889 1213.5519 1213.5521<br /> <br /> [[File:ES_bh3_vibrations.PNG|thumb|left|The vibrational frequencies of the BH&lt;sub&gt;3&lt;/sub&gt; molecule.]]<br /> [[File:ES_bh3_IRspec.PNG|thumb|right|Predicted IR spectrum of BH&lt;sub&gt;3&lt;/sub&gt;.]]<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> The three lower-frequency vibrations are bend vibrations whilst the higher-frequency vibrations are stretches. Vibration 4 is a symmetric stretch with no transition dipole moment and so it is not IR active. The absorption bands at 1213 and 2713 are each composed of two degenerate vibrational modes.<br /> <br /> [[Media:ES BH3 FREQNEW.LOG|The log file of the frequency calculation]]<br /> ===Lewis acid-base pair===<br /> ==Part 2: Project section==</div>

Es4215 https://chemwiki.ch.ic.ac.uk/index.php?title=File:ES_bh3_IRspec.PNG&diff=725265 2018-05-22T13:55:53Z

<p>Es4215: </p> <hr /> <div></div>

Es4215